AT1G20540.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.487 golgi 0.328 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Transducin/WD40 repeat-like superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: DWD (DDB1-binding WD40 protein) hypersensitive to ABA 2 (TAIR:AT1G76260.1); Has 8926 Blast hits to 7393 proteins in 418 species: Archae - 0; Bacteria - 876; Metazoa - 3687; Fungi - 2097; Plants - 1353; Viruses - 0; Other Eukaryotes - 913 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:7112652..7115191 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 39037.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.90 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||||||||||
| Length | 351 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQGGSSGIGY GLKYQSRCIS DVKADTDYTS FLTGTLSLKE ENEVHLLRLS SGGSELICEG LFSHPNEIWD LASCPFDQRI FSTVFSTGES FGAAIWQIPE 101: LYGQLNSPQL ERVASLDAHV GKINCVLWWP SGRCDKLISI DEQNIFLWSL DCSKKSAEVL SKDSAGMLHS LSGGAWDPHD VNAVAATGES SVQFWDLRTM 201: KKVNSIEHAH VRGVDYNPKR EHILVTAEDE SGIHVWDLRK AKVPVQELPG HTHWTWAVRC NPEYDGLILS AGTDSVVNLW YASATSSDDK TSESPVESTR 301: QRVNPLLNSY TDYEDSVYGL AWSSREPWVF ASLSYDGRVI IESVKPFLPR I |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)