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AT1G05970.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.627
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding (RRM/RBD/RNP motifs) family protein; Has 58 Blast hits to 58 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IX47eggNOG:ENOG410YGKDEMBL:AY133717EMBL:CP002684
EnsemblPlants:AT1G05970EnsemblPlants:AT1G05970.1entrez:837107ExpressionAtlas:Q8L7G5
Gene3D:3.30.70.330GeneID:837107GO:GO:0000166Gramene:AT1G05970.1
hmmpanther:PTHR36309hmmpanther:PTHR36309:SF1HOGENOM:HOG000242998InterPro:IPR012677
PhylomeDB:Q8L7G5Proteomes:UP000006548RefSeq:NP_172088.2SUPFAM:SSF54928
TAIR:AT1G05970UniGene:At.42360UniProt:Q8L7G5
Coordinates (TAIR10) chr1:-:1816253..1816991
Molecular Weight (calculated) 22655.70 Da
IEP (calculated) 10.08
GRAVY (calculated) -0.46
Length 198 amino acids
Sequence (TAIR10)
(BLAST)
001: MATPEEVAYE KFLERVRRTV YVDELTPLAT APVISSAFNQ FGTVKKVSFI PNYLGPKELP MGVLVEMENE EMTQAVISTV SQLPFMVAGM PRPVRACAAE
101: PNMFVDKPKK PGRTVRFRWI KPNDPDFDKA RRVKRLARKH SAENSFMLKL EEAEKLSKQQ AETAVTHHKK FEMMDKLLYD GVAQKLAGRY DLKGFPYR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)