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AT5G10050.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
peroxisome 0.987
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAD(P)-binding Rossmann-fold superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT5G65205.1); Has 119739 Blast hits to 119523 proteins in 3734 species: Archae - 959; Bacteria - 78106; Metazoa - 7703; Fungi - 6506; Plants - 2887; Viruses - 2; Other Eukaryotes - 23576 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G10050-MONOMEReggNOG:COG1028eggNOG:KOG1209EMBL:BT026044
EMBL:CP002688EnsemblPlants:AT5G10050EnsemblPlants:AT5G10050.1entrez:830869
Gene3D:3.40.50.720GeneID:830869GO:GO:0016491Gramene:AT5G10050.1
hmmpanther:PTHR24322hmmpanther:PTHR24322:SF320InterPro:IPR002347InterPro:IPR016040
InterPro:IPR020904KEGG:ath:AT5G10050OMA:MDVRDDAPANTHER:PTHR24322
Pfam:PF00106PhylomeDB:Q147P9PRINTS:PR00080PRINTS:PR00081
PROSITE:PS00061Proteomes:UP000006548RefSeq:NP_196567.2scanprosite:PS00061
SMR:Q147P9STRING:3702.AT5G10050.1SUPFAM:SSF51735TAIR:AT5G10050
UniGene:At.32419UniGene:At.32420UniProt:Q147P9
Coordinates (TAIR10) chr5:+:3144254..3145643
Molecular Weight (calculated) 30660.30 Da
IEP (calculated) 9.77
GRAVY (calculated) -0.08
Length 279 amino acids
Sequence (TAIR10)
(BLAST)
001: MESGDESPVV LITGCSQGGI GHALAREFTE KGCRVVATSR SRSTMTDLEQ DSRLFVKELD VQSDQNVSKV LSEVIDKFGK IDVLVNNAGV QCVGPLAETP
101: ISAMENTFNT NVFGSMRMTQ AVVPHMVSKK KGKIVNVGSI TVMAPGPWAG VYTATKAAIH ALTDTLRLEL RPFGIDVINV VPGGIRTNIA NSAVATFNKM
201: PELKLYKPYE EAIRERAFIS QRMNPTPAET FARDTVAAVL KKNPPAWFSS GRYSTLMAVM YHMPLWLKDF FQKQVLMKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)