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AT4G38090.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.906
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein S5 domain 2-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein S5 domain 2-like superfamily protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0029, Impact, N-terminal (InterPro:IPR001498), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1739eggNOG:KOG3299EMBL:AK317014EMBL:CP002687
EnsemblPlants:AT4G38090EnsemblPlants:AT4G38090.1entrez:829965ExpressionAtlas:B9DG41
Gene3D:3.30.230.30GeneID:829965GO:GO:0005840Gramene:AT4G38090.1
hmmpanther:PTHR16301hmmpanther:PTHR16301:SF0HOGENOM:HOG000075267InterPro:IPR001498
InterPro:IPR020568InterPro:IPR023582OMA:DAIKSNCPANTHER:PTHR16301
Pfam:PF01205PhylomeDB:B9DG41Proteomes:UP000006548RefSeq:NP_568034.1
SMR:B9DG41STRING:3702.AT4G38090.1SUPFAM:SSF54211TAIR:AT4G38090
UniGene:At.31206UniProt:B9DG41
Coordinates (TAIR10) chr4:-:17883757..17884702
Molecular Weight (calculated) 25214.30 Da
IEP (calculated) 8.58
GRAVY (calculated) -0.08
Length 234 amino acids
Sequence (TAIR10)
(BLAST)
001: MWVGVPVAAA VTTVGGRRIP VLVAASGKRS MASNSGSFTT LKETVSVEKE IKKSKFIAIA GPISSEQSAQ MFLSQVRDPR ASHNCWAYKI GDHHHRCSDD
101: GEPSGTAGKP IQSAILSSGL DRVMVVVIRY FGGIKLGTGG LVRAYGGVTS DCLKTAPSCL VKSKVQMGVE VTFDLLGVLY NQLQSCHAED IKEDYDTGKD
201: GTAMVSFKVE FDLVDKLEDA IKSNCRRDLV FYKT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)