AT5G42470.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.980 What is SUBAcon? |
|
||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Brain/reproductive organ-expressed protein (InterPro:IPR010358); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:16982365..16984738 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44120.10 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.06 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||
| Length | 382 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAFEEFPPLI ADQLHYLLNH SPDSIKIANV WSGNKINPKI LDRFTLVIPY CLETIKWDVI YNSEYAMDPP DFVFGPDDED FVPCKCSAIA PDDDQISSLE 101: KALSEWDHED STRLLVIIQG LRDQYVAYQR RRVGQVDDDR VKFEISTVLT RKGIEMQMAS GVDKPEEVKF AVPLVMDMNI NKMVVGCPWK HQQKIYLQVV 201: YPILRKYEAA PSAPRLKLVS YYDLKSLFSV EDVKLSPWMD GMCLAEYLPH LEETLERQIH EAVAAIDLRR SFIEALSLNL GRPLEADPTF CRKATFLNAS 301: GQFTFMVHFF FSTQFPKQQP TLMLQSCQHL NQSSVPVKSN LLTEYPWSPR WEVGRMAERL CDFLTDEAVN FKKYCNEALL QH |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)