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AT5G10710.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
INVOLVED IN: chromosome segregation, cell division; LOCATED IN: chromosome, centromeric region, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Centromere protein Cenp-O (InterPro:IPR018464); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
DNASU:830936eggNOG:ENOG410IVAZeggNOG:ENOG4111SYYEMBL:BT002314
EMBL:CP002688EnsemblPlants:AT5G10710EnsemblPlants:AT5G10710.1EnsemblPlants:AT5G10710.2
entrez:830936ExpressionAtlas:Q8GUP4GeneID:830936GO:GO:0000776
GO:GO:0034508Gramene:AT5G10710.1Gramene:AT5G10710.2hmmpanther:PTHR14582
HOGENOM:HOG000240697IntAct:Q8GUP4InterPro:IPR018464ncoils:Coil
OMA:KVICCLDPfam:PF09496PhylomeDB:Q8GUP4Proteomes:UP000006548
RefSeq:NP_568235.1RefSeq:NP_850804.1STRING:3702.AT5G10710.1TAIR:AT5G10710
UniGene:At.10126UniProt:Q8GUP4
Coordinates (TAIR10) chr5:+:3379619..3382648
Molecular Weight (calculated) 36023.30 Da
IEP (calculated) 5.44
GRAVY (calculated) -0.35
Length 312 amino acids
Sequence (TAIR10)
(BLAST)
001: MGEMIVSMDQ DIRLDTTRAR LSNLLKRHRE LSDRLTRDSD KTMLDRLNKE FEAARRSQSQ EVFLDGEEWN DGLLATLRER VHMEADRKAD NGNAGFSLVC
101: HPEERITYRV GNKVICCLDG SRIGIQFETS TAGETYEVYH CVLESKSFLE KMIVLEHTIP FFLPLSDLEN DLLFSNAKKF IDNVGDLLQA YVDRKEQVRL
201: IKELFGHQIS EIYHSLPYHM IEFSMDDCDC KFVVSLRYGD LLCELPTKVR ILVWPMHHLS KKQCTSPGSP AIPVRLPFAE DAFRIQSLPE AYAEIMPNMP
301: NEIRQLFQTS PS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)