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AT3G09900.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.887
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:30961429 (2019): nucleus
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:22550958 (2012): plastid
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RAB GTPase homolog E1E
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RAB GTPase homolog E1E (RABE1e); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog 8C (TAIR:AT5G03520.1); Has 29798 Blast hits to 29728 proteins in 826 species: Archae - 21; Bacteria - 199; Metazoa - 15588; Fungi - 4257; Plants - 3488; Viruses - 20; Other Eukaryotes - 6225 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XPUIeggNOG:KOG0078EMBL:AC015985EMBL:AK229294
EMBL:AY084345EMBL:BT024925EMBL:CP002686EnsemblPlants:AT3G09900
EnsemblPlants:AT3G09900.1entrez:820148Gene3D:3.40.50.300GeneID:820148
Genevisible:Q9SF91GO:GO:0000139GO:GO:0005525GO:GO:0005886
GO:GO:0006904GO:GO:0007264GO:GO:0009306Gramene:AT3G09900.1
hmmpanther:PTHR24073hmmpanther:PTHR24073:SF541HOGENOM:HOG000233968InParanoid:Q9SF91
InterPro:IPR001806InterPro:IPR005225InterPro:IPR027417KEGG:ath:AT3G09900
KO:K07901OMA:REHSIRFPaxDb:Q9SF91Pfam:PF00071
Pfam:Q9SF91Pfscan:PS51419PhylomeDB:Q9SF91PRIDE:Q9SF91
PRO:PR:Q9SF91PROSITE:PS51419ProteinModelPortal:Q9SF91Proteomes:UP000006548
Reactome:R-ATH-1445148Reactome:R-ATH-5620916RefSeq:NP_187601.1SMR:Q9SF91
STRING:3702.AT3G09900.1SUPFAM:SSF52540TAIR:AT3G09900tair10-symbols:ATRAB8E
tair10-symbols:ATRABE1Etair10-symbols:RABE1eTIGRfam:TIGR00231TIGRFAMs:TIGR00231
UniGene:At.40023UniProt:Q9SF91
Coordinates (TAIR10) chr3:+:3034687..3036379
Molecular Weight (calculated) 24295.80 Da
IEP (calculated) 8.43
GRAVY (calculated) -0.38
Length 218 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVAPARARS DYDYLIKLLL IGDSGVGKSC LLLRFSDDTF TTSFITTIGI DFKIRTVELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWM KNIEQHASDS VNKILVGNKA DMDESKRAVP TSKGQALADE YGIKFFETSA KTNQNVEQVF LSIAKDIKQR LTESDTKAEP QGIKITKQDA
201: NKASSSSTNE KSACCSYV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)