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AT5G26210.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30961429 (2019): nucleus
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : alfin-like 4
Curator
Summary (TAIR10)
AL4 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.
Computational
Description (TAIR10)
alfin-like 4 (AL4); CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Protein of unknown function DUF3594 (InterPro:IPR021998), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: alfin-like 3 (TAIR:AT3G42790.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:17965eggNOG:ENOG410YG6PeggNOG:KOG1632EMBL:AB493760
EMBL:AF077407EMBL:AK226367EMBL:AY087173EMBL:BT024475
EMBL:CP002688EnsemblPlants:AT5G26210EnsemblPlants:AT5G26210.1entrez:832690
EvolutionaryTrace:O81488Gene3D:3.30.40.10GeneID:832690Genevisible:O81488
GO:GO:0005634GO:GO:0005829GO:GO:0006351GO:GO:0006355
GO:GO:0008270GO:GO:0016568GO:GO:0035064Gramene:AT5G26210.1
hmmpanther:PTHR12321hmmpanther:PTHR12321:SF55HOGENOM:HOG000238550InParanoid:O81488
InterPro:IPR001965InterPro:IPR011011InterPro:IPR013083InterPro:IPR019786
InterPro:IPR019787InterPro:IPR021998iPTMnet:O81488KEGG:ath:AT5G26210
ncoils:CoilOMA:HPNEHWEPaxDb:O81488PDB:1WE9
PDBsum:1WE9Pfam:O81488Pfam:PF00628Pfam:PF12165
Pfscan:PS50016PhylomeDB:O81488PIR:T01840PRIDE:O81488
PRO:PR:O81488PROSITE:PS01359PROSITE:PS50016ProteinModelPortal:O81488
Proteomes:UP000006548RefSeq:NP_197993.1scanprosite:PS01359SMART:SM00249
SMR:O81488STRING:3702.AT5G26210.1SUPFAM:SSF57903TAIR:AT5G26210
tair10-symbols:AL4TMHMM:TMhelixUniGene:At.49064UniGene:At.68496
UniProt:O81488
Coordinates (TAIR10) chr5:-:9158566..9160221
Molecular Weight (calculated) 28780.50 Da
IEP (calculated) 4.74
GRAVY (calculated) -0.72
Length 255 amino acids
Sequence (TAIR10)
(BLAST)
001: MEAGGAYNPR TVEEVFRDFK GRRAGMIKAL TTDVQEFFRL CDPEKENLCL YGHPNEHWEV NLPAEEVPPE LPEPVLGINF ARDGMAEKDW LSLVAVHSDA
101: WLLAVAFFFG ARFGFDKADR KRLFNMVNDL PTIFEVVAGT AKKQGKDKSS VSNNSSNRSK SSSKRGSESR AKFSKPEPKD DEEEEEEGVE EEDEDEQGET
201: QCGACGESYA ADEFWICCDL CEMWFHGKCV KITPARAEHI KQYKCPSCSN KRARS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)