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AT4G40030.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30961429 (2019): nucleus
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24727099 (2014): mitochondrion
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Histone superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleosome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G10980.1); Has 14600 Blast hits to 14592 proteins in 7243 species: Archae - 0; Bacteria - 0; Metazoa - 10603; Fungi - 2037; Plants - 1258; Viruses - 0; Other Eukaryotes - 702 (source: NCBI BLink).
Protein Annotations
BioGrid:15444BioGrid:15445BioGrid:16243eggNOG:COG2036
eggNOG:KOG1745EMBL:AF385735EMBL:AL035708EMBL:AL161596
EMBL:AL365234EMBL:AL391222EMBL:AY070749EMBL:AY078027
EMBL:AY086668EMBL:AY097375EMBL:BT002391EMBL:BT003326
EMBL:BT025499EMBL:CP002687EMBL:CP002688EMBL:X60429
EnsemblPlants:AT4G40030EnsemblPlants:AT4G40030.1EnsemblPlants:AT4G40030.3EnsemblPlants:AT4G40040.1
EnsemblPlants:AT4G40040.2EnsemblPlants:AT5G10980.1entrez:830164entrez:830165
entrez:830965ExpressionAtlas:P59169Gene3D:1.10.20.10GeneID:830164
GeneID:830165GeneID:830965Genevisible:P59169GO:GO:0000786
GO:GO:0003677GO:GO:0005634hmmpanther:PTHR11426HOGENOM:HOG000155290
InParanoid:P59169InterPro:IPR000164InterPro:IPR007125InterPro:IPR009072
iPTMnet:P59169KEGG:ath:AT4G40040KEGG:ath:AT5G10980KO:K11253
PANTHER:PTHR11426PaxDb:P59169PDB:4PL6PDB:4PLI
PDB:4PLLPDBsum:4PL6PDBsum:4PLIPDBsum:4PLL
Pfam:P59169Pfam:PF00125PhylomeDB:P59169PIR:S24346
PRIDE:P59169PRINTS:PR00622PRO:PR:P59169PROSITE:PS00322
PROSITE:PS00959ProteinModelPortal:P59169Proteomes:UP000006548RefSeq:NP_001031816.1
RefSeq:NP_001078517.1RefSeq:NP_195713.1RefSeq:NP_196659.1RefSeq:NP_849529.1
scanprosite:PS00322scanprosite:PS00959SMART:SM00428SMR:P59169
STRING:3702.AT5G10980.1SUPFAM:SSF47113TAIR:AT4G40030TAIR:AT4G40040
TAIR:AT5G10980UniGene:At.10968UniGene:At.24091UniGene:At.25092
UniGene:At.6019UniGene:At.67362UniProt:B9DGR9UniProt:P59169
Coordinates (TAIR10) chr4:-:18555840..18556417
Molecular Weight (calculated) 15407.00 Da
IEP (calculated) 11.74
GRAVY (calculated) -0.60
Length 136 amino acids
Sequence (TAIR10)
(BLAST)
001: MARTKQTARK STGGKAPRKQ LATKAARKSA PTTGGVKKPH RYRPGTVALR EIRKYQKSTE LLIRKLPFQR LVREIAQDFK TDLRFQSHAV LALQEAAEAY
101: LVGLFEDTNL CAIHAKRVTI MPKDIQLARR IRGERA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)