suba logo
AT2G30620.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30961429 (2019): nucleus
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22923678 (2012): mitochondrion
  • PMID:22550958 (2012): plastid
  • PMID:22318864 (2012): plasma membrane
  • PMID:15496452 (2005): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : winged-helix DNA-binding transcription factor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
winged-helix DNA-binding transcription factor family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleolus, nucleus, nucleosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Histone H5 (InterPro:IPR005819), Histone H1/H5 (InterPro:IPR005818); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT1G06760.1); Has 19743 Blast hits to 11193 proteins in 1486 species: Archae - 45; Bacteria - 7849; Metazoa - 5019; Fungi - 1189; Plants - 983; Viruses - 143; Other Eukaryotes - 4515 (source: NCBI BLink).
Protein Annotations
BioGrid:2961eggNOG:ENOG410J0W4eggNOG:ENOG410XYG5EMBL:AF360211
EMBL:AY040059EMBL:AY085789EMBL:CP002685EMBL:U93215
EMBL:X62459EnsemblPlants:AT2G30620EnsemblPlants:AT2G30620.1entrez:817612
ExpressionAtlas:P26569Gene3D:1.10.10.10GeneID:817612Genevisible:P26569
GO:GO:0000786GO:GO:0003677GO:GO:0005730GO:GO:0005739
GO:GO:0006334hmmpanther:PTHR11467hmmpanther:PTHR11467:SF48HOGENOM:HOG000240494
InParanoid:P26569InterPro:IPR005818InterPro:IPR005819InterPro:IPR011991
iPTMnet:P26569OMA:PPNFRKIPaxDb:P26569Pfam:P26569
Pfam:PF00538Pfscan:PS51504PIR:S19699PRIDE:P26569
PRINTS:PR00624PRO:PR:P26569PROSITE:PS51504ProteinModelPortal:P26569
Proteomes:UP000006548RefSeq:NP_180620.1SMART:SM00526STRING:3702.AT2G30620.1
SUPFAM:SSF46785TAIR:AT2G30620UniGene:At.20406UniProt:P26569
Coordinates (TAIR10) chr2:+:13045360..13046267
Molecular Weight (calculated) 28488.40 Da
IEP (calculated) 11.60
GRAVY (calculated) -0.61
Length 273 amino acids
Sequence (TAIR10)
(BLAST)
001: MSIEEENVPT TVDSGAADTT VKSPEKKPAA KGGKSKKTTT AKATKKPVKA AAPTKKKTTS SHPTYEEMIK DAIVTLKERT GSSQYAIQKF IEEKHKSLPP
101: TFRKLLLVNL KRLVASEKLV KVKASFKIPS ARSAATPKPA APVKKKATVV AKPKGKVAAA VAPAKAKAAA KGTKKPAAKV VAKAKVTAKP KAKVTAAKPK
201: SKSVAAVSKT KAVAAKPKAK ERPAKASRTS TRTSPGKKVA APAKKVAVTK KAPAKSVKVK SPAKRASTRK AKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)