AT2G30620.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : winged-helix DNA-binding transcription factor family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
winged-helix DNA-binding transcription factor family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleolus, nucleus, nucleosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Histone H5 (InterPro:IPR005819), Histone H1/H5 (InterPro:IPR005818); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT1G06760.1); Has 19743 Blast hits to 11193 proteins in 1486 species: Archae - 45; Bacteria - 7849; Metazoa - 5019; Fungi - 1189; Plants - 983; Viruses - 143; Other Eukaryotes - 4515 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr2:+:13045360..13046267 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 28488.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 11.60 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.61 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 273 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MSIEEENVPT TVDSGAADTT VKSPEKKPAA KGGKSKKTTT AKATKKPVKA AAPTKKKTTS SHPTYEEMIK DAIVTLKERT GSSQYAIQKF IEEKHKSLPP 101: TFRKLLLVNL KRLVASEKLV KVKASFKIPS ARSAATPKPA APVKKKATVV AKPKGKVAAA VAPAKAKAAA KGTKKPAAKV VAKAKVTAKP KAKVTAAKPK 201: SKSVAAVSKT KAVAAKPKAK ERPAKASRTS TRTSPGKKVA APAKKVAVTK KAPAKSVKVK SPAKRASTRK AKK |
||||||||||||||||||||||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)