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AT1G63540.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : hydroxyproline-rich glycoprotein family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
hydroxyproline-rich glycoprotein family protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G63530.1); Has 23394 Blast hits to 12215 proteins in 815 species: Archae - 17; Bacteria - 3216; Metazoa - 8302; Fungi - 5746; Plants - 1148; Viruses - 308; Other Eukaryotes - 4657 (source: NCBI BLink).
Protein Annotations
EMBL:AC008047EMBL:CP002684EnsemblPlants:AT1G63540EnsemblPlants:AT1G63540.1
entrez:842659GeneID:842659Gramene:AT1G63540.1HOGENOM:HOG000153466
KEGG:ath:AT1G63540OMA:FASHEWSPhylomeDB:Q9SH38PIR:F96660
Proteomes:UP000006548RefSeq:NP_176542.1SMR:Q9SH38TAIR:AT1G63540
UniGene:At.36117UniGene:At.75437UniProt:Q9SH38
Coordinates (TAIR10) chr1:+:23567495..23569495
Molecular Weight (calculated) 64110.30 Da
IEP (calculated) 6.36
GRAVY (calculated) -0.15
Length 635 amino acids
Sequence (TAIR10)
(BLAST)
001: MKIDFSEPEC SNCYQFTNPD LLNTPESEQS NVIGSSITSV PVNDGPVPPL ELDSAAVVST STSSPVQALG HDSGATVSTS TSSPVQIFSS PFSFGSAHAA
101: ITPVSSGPAP SPTFGEPRIL LATSGSGASA TSTSSTSSPL HSSSPFSFGS APAAITSVSS GPAQSPASSP RLWIDRFATS SSASATSSSS TSSPFHSSSL
201: LGFAPAVTSV SSAPTPACGP TQAFGQPTQA FGLSMFGSTP RFEITGFPFQ ASASRNSPSP SFGPAHNCGK PAFGSPFGNN VAFARPDVGI SPVASSSTST
301: EIFGATPASL FSPFGPMQAP VQASASSTST FPPFGCVPPS PSSGSSLFNS AFGSLPAPSS SNFFGQSSSN LLGQNPSTTG VGYLPGSPLN SSFPGFGVGY
401: LPGSSSNLFR SNPPNFGGGS IGAGPQHFGF NGDASVLPST PFSLSPAFSS NTNTGSYPFA SHEWSRPTEQ GSMNPGYAPT HEGDNSSGWS FPTSKGNIYI
501: SISASKPYLH KSHEELRWED YKQGDKGGPF PAAPASTIGS RPNAAFSPPT VSPPAHGCTA CGATSSSSAS RHFTFNGATS PPSAATTPPG LFFPSTGFAP
601: MMFGTNLAVQ GTSPALQAYP VQGYILLPFA AMTLQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)