suba logo
AT5G24240.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
peroxisome 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein; FUNCTIONS IN: inositol or phosphatidylinositol kinase activity, phosphotransferase activity, alcohol group as acceptor; LOCATED IN: peroxisome; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol 3-/4-kinase, catalytic (InterPro:IPR000403), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: phosphoinositide 4-kinase gamma 4 (TAIR:AT2G46500.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
EC:2.7.1.67eggNOG:ENOG410XP06eggNOG:KOG0001eggNOG:KOG2381
EMBL:AB006701EMBL:AK226621EMBL:CP002688EnsemblPlants:AT5G24240
EnsemblPlants:AT5G24240.1entrez:832491GeneID:832491Genevisible:Q9FNF8
GO:GO:0004430GO:GO:0005524GO:GO:0005634GO:GO:0005777
GO:GO:0009737GO:GO:0009909GO:GO:0016301GO:GO:0035091
GO:GO:1902074Gramene:AT5G24240.1hmmpanther:PTHR10666hmmpanther:PTHR10666:SF135
HOGENOM:HOG000238995InParanoid:Q9FNF8InterPro:IPR000403InterPro:IPR000626
InterPro:IPR011009InterPro:IPR029071KEGG:ath:AT5G24240OMA:PENTKIG
PaxDb:Q9FNF8Pfam:PF00240Pfam:PF00454Pfam:Q9FNF8
Pfscan:PS50053PhylomeDB:Q9FNF8PRIDE:Q9FNF8PRO:PR:Q9FNF8
PROSITE:PS50053ProteinModelPortal:Q9FNF8Proteomes:UP000006548RefSeq:NP_197812.1
SMART:SM00213SMR:Q9FNF8STRING:3702.AT5G24240.1SUPFAM:SSF54236
SUPFAM:SSF56112TAIR:AT5G24240UniGene:At.43540UniGene:At.54971
UniProt:Q9FNF8
Coordinates (TAIR10) chr5:-:8231110..8232925
Molecular Weight (calculated) 64038.70 Da
IEP (calculated) 5.42
GRAVY (calculated) -0.29
Length 574 amino acids
Sequence (TAIR10)
(BLAST)
001: MSVASVALSP ALEELVNFPG IIGRFGFNLD DPILVFLTIA GSVIPKRVME SDSIASVKLR IQSIKGFFVK KQKLLYDGRE VSRNDSQIRD YGLADGKLLH
101: LVIRLSDLQA ISVRTVDGKE FELVVERSRN VGYVKQQIAS KEKELGIPRD HELTLDGEEL DDQRLITDLC QNGDNVIHLL ISKSAKVRAK PVGKDFEVFI
201: EDVNHKHNVD GRRGKNISSE AKPKEFFVEP FIVNPEIKLP ILLKELISST LEGLEKGNGP IRSSDGSGGA YFMQDPSGHK YVSVFKPIDE EPMAVNNPHG
301: QPVSVDGEGL KKGTQVGEGA IREVAAYILD YPMTGPRTFP HDQTGFAGVP PTTMVKCLHK DFNHPNGYSF SPENTKIGSL QMFVSNVGSC EDMGYRVFPV
401: DQVHKISVLD IRLANADRHA GNILVSRDGK DGQMVLTPID HGYCFPNKFE DCTFEWLYWP QAKEPYSSET LEYIKSLDPE KDIELLRFHG WEIPPSCTRV
501: LRISTMLLKK GSAKGLTPFT IGSIMCRETL KEESVIEQII HDAEAIVPTE TTEDEFISTV SAIMDNRLDQ YAWN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)