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AT5G24230.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.823
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Lipase class 3-related protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Lipase class 3-related protein; FUNCTIONS IN: triglyceride lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: Lipase class 3-related protein (TAIR:AT5G24220.1); Has 233 Blast hits to 232 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 10; Plants - 216; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
DNASU:832490eggNOG:ENOG410JB8TeggNOG:ENOG41114F2EMBL:AK119103
EMBL:BT005327EMBL:CP002688EnsemblPlants:AT5G24230EnsemblPlants:AT5G24230.1
entrez:832490ESTHER:arath-AT5G24230Gene3D:3.40.50.1820GeneID:832490
GO:GO:0006629GO:GO:0016787Gramene:AT5G24230.1hmmpanther:PTHR31479
hmmpanther:PTHR31479:SF4HOGENOM:HOG000238233InterPro:IPR002921InterPro:IPR029058
KEGG:ath:AT5G24230OMA:GIHQWWDPfam:PF01764PhylomeDB:Q8GW37
Proteomes:UP000006548RefSeq:NP_197811.2SMR:Q8GW37SUPFAM:SSF53474
TAIR:AT5G24230UniGene:At.43540UniGene:At.54971UniProt:Q8GW37
Coordinates (TAIR10) chr5:+:8229182..8230841
Molecular Weight (calculated) 41547.40 Da
IEP (calculated) 9.33
GRAVY (calculated) -0.34
Length 369 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEEDDEVMV REGLMASQRE IFSISGPIHL TSIDWNNSYH RTSVASCLVQ AVYTLERDRQ QNRIGLKSQA NHWWEFFNFT LAETLIDDSD GSIYGAVFEY
101: KHFFSYNYHH TPHSKPPPRH VIAFRGTILK PHSRSRDLKL DLRCIRDSLH DSTRFVHAIQ VIQSAVAKTG NAAVWLAGHS LGAAVALLAG KIMTRSGFPL
201: ESYLFNPPFS SIPIEKLVKS EKLKHGVRFA GSLVKAGVAI AVKGRHHNKG QEDDSFMKLA SWIPYLYLNP LDTICSEYIG YFKHRNKMFE IGAGKIERIA
301: TRNSLRSLLS GGGGGGSSSD SSSEPLHLLP SAYMTINASK SPNFKRAHGI HQWWDPMFNG EYVLHQFNN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)