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AT5G38340.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.995
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Disease resistance protein (TIR-NBS-LRR class) family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane, endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT1G65850.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4886EMBL:AB011481EMBL:CP002688EnsemblPlants:AT5G38340
EnsemblPlants:AT5G38340.1entrez:833816Gene3D:3.40.50.10140Gene3D:3.40.50.300
Gene3D:3.80.10.10GeneID:833816GO:GO:0005524GO:GO:0007165
GO:GO:0016021GO:GO:0043531Gramene:AT5G38340.1hmmpanther:PTHR11017
hmmpanther:PTHR11017:SF20HOGENOM:HOG000064702InterPro:IPR000157InterPro:IPR002182
InterPro:IPR011713InterPro:IPR011991InterPro:IPR027417InterPro:IPR032675
KEGG:ath:AT5G38340OMA:LNRNNFDPfam:PF00931Pfam:PF01582
Pfam:PF07725Pfscan:PS50104PhylomeDB:Q9FKM9PROSITE:PS50104
Proteomes:UP000006548RefSeq:NP_198650.1SMART:SM00255SMR:Q9FKM9
STRING:3702.AT5G38340.1SUPFAM:SSF46785SUPFAM:SSF52058SUPFAM:SSF52200
SUPFAM:SSF52540TAIR:AT5G38340TMHMM:TMhelixUniGene:At.55217
UniProt:Q9FKM9
Coordinates (TAIR10) chr5:+:15320507..15324061
Molecular Weight (calculated) 120865.00 Da
IEP (calculated) 7.96
GRAVY (calculated) -0.21
Length 1059 amino acids
Sequence (TAIR10)
(BLAST)
0001: MDSSFLSSFC ATAIIFFTLF GTIYFMFYRK VKSHQENKTI ASSLALPTIP SSLSRKYDVF PSFHGADVRK TFLSHMLKEF KRKGIVPFID NDIDRSKSIG
0101: PELDEAIRGS KIAIVMLSKN YASSSWCLNE LVEITKCRKD LNQTVMTIFY GVDPTDVKKQ TGEFGKVFER TCESKTEEQV KTWREVLDGA ATIAGEHWHI
0201: WDNEASMIEK ISIDVSNILN RSSPSRDFDD LIGMEAHMEK MKSLLSLHSN EVKMIGIWGP SGIGKTTIAR VLYNRFSGDF GLSVFMDNIK ELMHTRPVGS
0301: DDYSAKLHLQ NQLMSEITNH KETKITHLGV VPDRLKDNKV LIVLDSIDQS IQLDAIAKET QWFGPGSRII ITTQDQKLLE AHDINNIYKV EFPSKYEAFQ
0401: IFCTYAFGQN FPKDGFEKLA WEVTDLLGEL PLGLRVMGSH FRRMSKDDWV IALPRLKTRL DANIQSILKF SYDALSPEDK DLFLHIACLF NNEEIVKVED
0501: YLALDFLDAR HGLHLLAEKS LIDLEGVNYK VLKMHNLLEQ LGKEIVRYHP AHHSIREPEK RQFLVDTKDI CEVLADGTGS KSIKGICFDL DNLSGRLNIS
0601: ERAFEGMTNL KFLRVLRDRS EKLYLPQGLN YLPKKLRLIE WDYFPMKSLP SNFCTTYLVN LHMRKSKLEK LWEGKQPLGN LKWMNLSNSR NLKELPDLST
0701: ATKLQDLNLT RCSSLVEIPF SIGNTTNLEK LNLVMCTSLV ELPSSIGSLH KLRELRLRGC SKLEVLPTNI SLESLDNLDI TDCSLLKSFP DISTNIKHLS
0801: LARTAINEVP SRIKSWSRLR YFVVSYNENL KESPHALDTI TMLSSNDTKM QELPRWVKKI SRLETLMLEG CKNLVTLPEL PDSLSNIGVI NCESLERLDC
0901: SFYKHPNMFI GFVNCLKLNK EARELIQTSS STCSILPGRR VPSNFTYRKT GGSVLVNLNQ SPLSTTLVFK ACVLLVNKDD KKKEANGTSF QVYYRIMDKR
1001: KLGVIVPWRS AHGFVVPPIL AEHLLTFELE ADVKTNEFFF EFEVNRYEVV IKECGVLQL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)