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AT4G23510.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.837
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22923678 (2012): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Disease resistance protein (TIR-NBS-LRR class) family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: defense response signaling pathway, resistance gene-dependent, signal transduction, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: hypocotyl, male gametophyte, root; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G11340.1); Has 2769 Blast hits to 1483 proteins in 48 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 2762; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JWA1eggNOG:ENOG411054IEMBL:CP002687EnsemblPlants:AT4G23510
EnsemblPlants:AT4G23510.1entrez:828451Gene3D:3.40.50.10140GeneID:828451
GO:GO:0005773GO:GO:0007165Gramene:AT4G23510.1hmmpanther:PTHR32009
InParanoid:F4JNL1InterPro:IPR000157KEGG:ath:AT4G23510OMA:ISEINVF
PaxDb:F4JNL1Pfam:PF01582Pfscan:PS50104PRIDE:F4JNL1
PROSITE:PS50104ProteinModelPortal:F4JNL1Proteomes:UP000006548RefSeq:NP_194082.2
SMART:SM00255SMR:F4JNL1STRING:3702.AT4G23510.1SUPFAM:SSF52200
TAIR:AT4G23510UniGene:At.32422UniProt:F4JNL1
Coordinates (TAIR10) chr4:-:12267516..12270526
Molecular Weight (calculated) 72532.50 Da
IEP (calculated) 8.40
GRAVY (calculated) -0.26
Length 635 amino acids
Sequence (TAIR10)
(BLAST)
001: MTNSSQSRKP QVFISFRGKA QRKTLVSFIK SKLEEISEIN VFMDEYEIRG RPITTLFERI RESSIALVIF SDKYPESRWC LDELVEIKKQ METGSIVPFP
101: IFYKVKAESV KNQTGHFRNV LLKTEEDVRK KVDRSNIRSI LETEDMIWGW RQALVSVGGR MGFSYNHKCD NDFVNDIVVQ IKKMLADLSP SPRNGLKIIE
201: RPQMHPQEEV TSLLQALNLK KSDLEDLIHI NGVVSHGTDR LVFLDLISLQ NPILADRLIE LVQAGRNLLV LLGSLEYYNK GFTFKRIFLP KKSQQLPGYT
301: VVAESNDNLR NHEVSYSDTV LTCFSFLCNI LKRSEMKIDP LSQRVFIGLG EKHLGKFLVS SLKEELESNQ ILVYVEDETK SRIKESGVAV VFFSKKYPNS
401: EKCLDELVEI KKLMDAGKID PLPVFYSLKD EPVKNLKGYF LNRLLKIENE VRKNIKTRDD KSILDTEAKI WGWRDALSSI ASRPGLSYEL STDDVFVSDI
501: VTKVNELFAS RERKKTEAAT TVVKTLDADD LFYSRTSFLQ AIDRDITDFE SFTDIPNGLV LLRLKGHTNL VFLKLSSHEN LLQVLYLLSL DFNKRGGEAE
601: SIVTSASGSI VAASSMFQPL DNSIRIDLNR QKYAT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)