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AT2G01900.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.964
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNAse I-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DNAse I-like superfamily protein; FUNCTIONS IN: hydrolase activity, inositol or phosphatidylinositol phosphatase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: hypocotyl, sepal, root; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Inositol polyphosphate related phosphatase (InterPro:IPR000300), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: DNAse I-like superfamily protein (TAIR:AT2G37440.1); Has 2320 Blast hits to 2027 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 735; Fungi - 544; Plants - 769; Viruses - 0; Other Eukaryotes - 272 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G01900-MONOMEREC:3.1.3.36EC:3.1.3.86eggNOG:COG5411
eggNOG:KOG0565EMBL:AC007069EMBL:BX818920EMBL:CP002685
EnsemblPlants:AT2G01900EnsemblPlants:AT2G01900.1entrez:814721Gene3D:3.60.10.10
GeneID:814721Genevisible:Q9SIS4GO:GO:0004439GO:GO:0034485
GO:GO:0034595GO:GO:0046856GO:GO:0071472GO:GO:2000369
GO:GO:2000377Gramene:AT2G01900.1hmmpanther:PTHR11200hmmpanther:PTHR11200:SF63
HOGENOM:HOG000241161InParanoid:Q9SIS4InterPro:IPR000300InterPro:IPR005135
KEGG:ath:AT2G01900OMA:ELACRDYPaxDb:Q9SIS4Pfam:PF03372
PhylomeDB:Q9SIS4PIR:E84430PRIDE:Q9SIS4PRO:PR:Q9SIS4
ProteinModelPortal:Q9SIS4Proteomes:UP000006548Reactome:R-ATH-1660514Reactome:R-ATH-1855183
Reactome:R-ATH-1855204Reactome:R-ATH-194840RefSeq:NP_178299.1SMART:SM00128
SMR:Q9SIS4STRING:3702.AT2G01900.1SUPFAM:SSF56219TAIR:AT2G01900
UniGene:At.50064UniProt:Q9SIS4
Coordinates (TAIR10) chr2:+:406136..408933
Molecular Weight (calculated) 47926.30 Da
IEP (calculated) 9.14
GRAVY (calculated) -0.48
Length 417 amino acids
Sequence (TAIR10)
(BLAST)
001: MWPRLVANKI LRKSLGSNNF VADFPPNTDQ KLIEASGLAD ERSKSILHNQ HKTTLLNYKV FVSTWNVGGI VPDDGLDMED LLETHKTPCD IYVLGFQEVV
101: PLRASNVLGS DNNKVSTKWN SLIRDALNKR ARPHRDEDLS ESKGINGISQ DFRCIISKQM VGILITVWVR GDLWPYIRYP SVSCVGCGIM GCLGNKGSVS
201: VRFQLHETTF CFVCSHLASG GRDRDERQRN SDVNEILARS SFPRGSSLDL PKKILDHDRV IFLGDLNYRI SLPEEKTRLL VESKKWNILL ENDQLRMEIM
301: NGQIFRGWQE GIVKFAPTYK YVPNSDLYYG CITYKKDEKK RAPAWCDRII WYGNGLKQHE YTRGETKISD HRPVKAIFTT EITVTRRGKK IRNFFFSDRF
401: EERIGDIDSK DYSWIST
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)