AT1G53940.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : GDSL-motif lipase 2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a lipase, has in vitro lipase activity with p-nitrophenyl acetate and p-nitrophenyl butyrate, gene expression induced by hormones, negatively regulates auxin signaling, involved in disease resistance | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
GDSL-motif lipase 2 (GLIP2); FUNCTIONS IN: lipase activity, arylesterase activity, carboxylesterase activity; INVOLVED IN: response to jasmonic acid stimulus, response to ethylene stimulus, defense response to bacterium, response to salicylic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: seedling, stem, cotyledon, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL lipase 1 (TAIR:AT5G40990.1); Has 3238 Blast hits to 3145 proteins in 120 species: Archae - 0; Bacteria - 110; Metazoa - 0; Fungi - 27; Plants - 3095; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:20143279..20145780 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 48780.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.67 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 436 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MENSRSTLII FFAYTTIILI GSINCRDNNN NNLVTNQSAL FVFGDSVFDA GNNNYIDTLP SFRSNYWPYG QTTFKFPTGR VSDGRTIPDF IAEYAWLPLI 101: PAYLQPSNGK NQFPYGVSFA SAGAGALVGT FPGMVINLKS QLNNFKKVEK LLRSTLGEAQ GKMVISRAVY LFHIGVNDYQ YPFSTNSSIF QSSPQEIYVD 201: FVVGNTTAVI KEVYKIGGRK FGFLNMGAYD CAPASLIIDQ TKIGTCFKPV TELINLHNEK LESGLRRLER ELSGFKYALH DYHTSLSVRM NNPSKYGFKE 301: GKMACCGTGP LRGINTCGGR MGVSQSYELC EKVTDYLFFD HFHLTEKAHQ QIAELIWSGP TNGLRKGIRH VCGTGPLRGI NTCGGRVSAQ VQGYELCENV 401: ADYLFLNSFH LIEKAHRQTT DRRDYLERTG QCYRTL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)