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AT3G20380.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : TRAF-like family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
TRAF-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT3G20370.1); Has 521 Blast hits to 488 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 17; Fungi - 0; Plants - 490; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQV8eggNOG:KOG1987EMBL:AB024036EMBL:AK176197
EMBL:AK176301EMBL:AK176307EMBL:CP002686EnsemblPlants:AT3G20380
EnsemblPlants:AT3G20380.1entrez:821583Gene3D:2.60.210.10GeneID:821583
Gramene:AT3G20380.1hmmpanther:PTHR26379hmmpanther:PTHR26379:SF162HOGENOM:HOG000015142
InterPro:IPR002083InterPro:IPR008974KEGG:ath:AT3G20380Pfam:PF00917
Pfscan:PS50144PhylomeDB:Q9LTQ4PROSITE:PS50144Proteomes:UP000006548
RefSeq:NP_188673.1SMART:SM00061STRING:3702.AT3G20380.1SUPFAM:SSF49599
TAIR:AT3G20380TMHMM:TMhelixUniGene:At.38247UniProt:Q9LTQ4
Coordinates (TAIR10) chr3:+:7108183..7109770
Molecular Weight (calculated) 43160.10 Da
IEP (calculated) 8.92
GRAVY (calculated) -0.29
Length 375 amino acids
Sequence (TAIR10)
(BLAST)
001: MTSLYRNTSS FVYLLFCLFI TSSSAGSFIR QFSDDFNTIQ QQKGKDGPTP NLEKGNYLHK HNEISSSLDY KVSASNIVKG LTEVPPSSYS FKIESYNSFL
101: KIPYLGFESR PFAAGGYNWV LKVHPNGLTW DGTSGYVSLY VLLHESTPIT ADQVVYADLR FYIFNNNEKK YFTVQDTNVW KFTAPKRLLG FPKVMSADQF
201: EDLRNGYIYD NHCEFGVDVT VASHYQKSES LFVTEKFDNP IFTYALLRFS TLLKESYQSD VFSIGGRSMY LQVFPNGRNL SKGKAMSLYL NINDKFKPFE
301: MIYVRAKLRV LNQRKLNNVE IQVSNWYTSW FYYSGDFQII PLADLRDSSK GFVVNDMLKV EVQLEGISST KWYPS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)