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AT5G19890.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Peroxidase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: oxidation reduction, response to oxidative stress; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT5G06730.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G19890-MONOMERBioGrid:17387EC:1.11.1.7eggNOG:ENOG410IP2G
eggNOG:ENOG410YC4VEMBL:AF296836EMBL:AY088025EMBL:AY123985
EMBL:BT000582EMBL:CP002688EMBL:X98453EnsemblPlants:AT5G19890
EnsemblPlants:AT5G19890.1entrez:832111EvolutionaryTrace:Q39034GeneID:832111
Genevisible:Q39034GO:GO:0004601GO:GO:0005576GO:GO:0005634
GO:GO:0005737GO:GO:0006979GO:GO:0020037GO:GO:0042744
GO:GO:0046872Gramene:AT5G19890.1hmmpanther:PTHR31388hmmpanther:PTHR31388:SF6
HOGENOM:HOG000237557InParanoid:Q39034InterPro:IPR000823InterPro:IPR002016
InterPro:IPR010255InterPro:IPR019793InterPro:IPR019794KEGG:00940+1.11.1.7
KEGG:ath:AT5G19890KO:K00430MINT:MINT-8066504OMA:FFRDFTC
PaxDb:Q39034PDB:1QGJPDBsum:1QGJPeroxiBase:225
Pfam:PF00141Pfam:Q39034Pfscan:PS50873PhylomeDB:Q39034
PRIDE:Q39034PRINTS:PR00458PRINTS:PR00461PRO:PR:Q39034
PROSITE:PS00435PROSITE:PS00436PROSITE:PS50873ProteinModelPortal:Q39034
Proteomes:UP000006548RefSeq:NP_568385.1scanprosite:PS00435scanprosite:PS00436
SMR:Q39034STRING:3702.AT5G19890.1SUPFAM:SSF48113TAIR:AT5G19890
TMHMM:TMhelixUniGene:At.143UniProt:Q39034
Coordinates (TAIR10) chr5:-:6724372..6725877
Molecular Weight (calculated) 35025.20 Da
IEP (calculated) 7.85
GRAVY (calculated) 0.18
Length 328 amino acids
Sequence (TAIR10)
(BLAST)
001: MKTQTKVMGG HVLLTVFTLC MLCSGVRAQL SPDIYAKSCP NLVQIVRKQV AIALKAEIRM AASLIRLHFH DCFVNGCDAS LLLDGADSEK LAIPNINSAR
101: GFEVIDTIKA AVENACPGVV SCADILTLAA RDSVVLSGGP GWRVALGRKD GLVANQNSAN NLPSPFEPLD AIIAKFVAVN LNITDVVALS GAHTFGQAKC
201: AVFSNRLFNF TGLGNPDATL ETSLLSNLQT VCPLGGNSNI TAPLDRSTTD TFDNNYFKNL LEGKGLLSSD QILFSSDLAV NTTKKLVEAY SRSQSLFFRD
301: FTCAMIRMGN ISNGASGEVR TNCRVINN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)