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AT1G49570.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28003327 (2017): extracellular region apoplast
  • PMID:16356755 (2006): extracellular region
  • PMID:15694452 (2005): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Peroxidase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: oxidation reduction, response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: leaf lamina base, leaf whorl, hypocotyl, sepal, root; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT5G06730.1); Has 4743 Blast hits to 4717 proteins in 317 species: Archae - 0; Bacteria - 4; Metazoa - 5; Fungi - 358; Plants - 4305; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G49570-MONOMEREC:1.11.1.7eggNOG:ENOG410IJ2VeggNOG:ENOG41118P7
EMBL:AC011807EMBL:AK119130EMBL:BT006242EMBL:CP002684
EMBL:X98809EnsemblPlants:AT1G49570EnsemblPlants:AT1G49570.1entrez:841381
GeneID:841381Genevisible:Q9FX85GO:GO:0004601GO:GO:0005576
GO:GO:0006979GO:GO:0020037GO:GO:0042744GO:GO:0046872
Gramene:AT1G49570.1hmmpanther:PTHR31388hmmpanther:PTHR31388:SF35HOGENOM:HOG000237557
InParanoid:Q9FX85InterPro:IPR000823InterPro:IPR002016InterPro:IPR010255
InterPro:IPR019793InterPro:IPR019794KEGG:00940+1.11.1.7KEGG:ath:AT1G49570
KO:K00430OMA:NSETADMPaxDb:Q9FX85PeroxiBase:86
Pfam:PF00141Pfam:Q9FX85Pfscan:PS50873PhylomeDB:Q9FX85
PIR:C96532PRIDE:Q9FX85PRINTS:PR00458PRINTS:PR00461
PRO:PR:Q9FX85PROSITE:PS00435PROSITE:PS00436PROSITE:PS50873
ProteinModelPortal:Q9FX85Proteomes:UP000006548RefSeq:NP_175380.2scanprosite:PS00435
scanprosite:PS00436SMR:Q9FX85STRING:3702.AT1G49570.1SUPFAM:SSF48113
TAIR:AT1G49570TMHMM:TMhelixUniGene:At.141UniProt:Q9FX85
Coordinates (TAIR10) chr1:+:18347077..18348712
Molecular Weight (calculated) 38032.20 Da
IEP (calculated) 6.62
GRAVY (calculated) -0.04
Length 350 amino acids
Sequence (TAIR10)
(BLAST)
001: MDHKMSMYLF VSYLAIFTLF FKGFVSSFPS GYNNGYNNGH GHGLTSNLNY RFYDRSCPRL QTIVKSGVWR AFKDDSRIAA SLLRLHFHDC FVNGCDGSIL
101: LNDSEDFKGE KNAQPNRNSV RGFEVIEDIK SDIESSCPLT VSCADIVALA AREAVVLTGG PFWPVPLGRR DSLTASEQAA NTNLPSPFEA LENITAKFVT
201: LGLDLKDVVV LSGAHTIGFA QCFVIKHRLF NFKGSGQPDP NLAASSALLS KLKDTCPNVD SSDSKLAALD AASSVKFDNA YYVNLMNNIG LLDSDQTLMT
301: DPTAAALVKS YSENPYLFSR DFAVSMVKMG NIGVMTGSDG VIRGKCGFPG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)