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AT1G18100.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.949
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : PEBP (phosphatidylethanolamine-binding protein) family protein
Curator
Summary (TAIR10)
Encodes a member of the FT and TFL1 family of phosphatidylethanolamine-binding proteins. It is expressed in seeds and up-regulated in response to ABA. Loss of function mutants show decreased rate of germination in the presence of ABA. ABA dependent regulation is mediated by both ABI3 and ABI5. ABI5 promotes MFT expression, primarily in the radicle-hypocotyl transition zone and ABI3 suppresses it in the seed.
Computational
Description (TAIR10)
E12A11; CONTAINS InterPro DOMAIN/s: Phosphatidylethanolamine-binding, conserved site (InterPro:IPR001858), Phosphatidylethanolamine-binding protein PEBP (InterPro:IPR008914); BEST Arabidopsis thaliana protein match is: PEBP (phosphatidylethanolamine-binding protein) family protein (TAIR:AT5G03840.1); Has 2417 Blast hits to 2417 proteins in 371 species: Archae - 0; Bacteria - 118; Metazoa - 639; Fungi - 192; Plants - 1429; Viruses - 3; Other Eukaryotes - 36 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1881eggNOG:KOG3346EMBL:AC034107EMBL:AC069551
EMBL:AF147721EMBL:AF332406EMBL:CP002684EnsemblPlants:AT1G18100
EnsemblPlants:AT1G18100.1entrez:838390Gene3D:3.90.280.10GeneID:838390
Genevisible:Q9XFK7GO:GO:0005634GO:GO:0005737GO:GO:0009737
GO:GO:0009738GO:GO:0010030Gramene:AT1G18100.1hmmpanther:PTHR11362
hmmpanther:PTHR11362:SF38HOGENOM:HOG000237656InParanoid:Q9XFK7InterPro:IPR001858
InterPro:IPR008914KEGG:ath:AT1G18100OMA:LPYMEPRPaxDb:Q9XFK7
Pfam:PF01161Pfam:Q9XFK7PhylomeDB:Q9XFK7PRIDE:Q9XFK7
PRO:PR:Q9XFK7PROSITE:PS01220ProteinModelPortal:Q9XFK7Proteomes:UP000006548
RefSeq:NP_173250.1scanprosite:PS01220SMR:Q9XFK7STRING:3702.AT1G18100.1
SUPFAM:SSF49777TAIR:AT1G18100tair10-symbols:E12A11tair10-symbols:MFT
UniGene:At.48205UniGene:At.70260UniProt:Q9XFK7
Coordinates (TAIR10) chr1:-:6228049..6230110
Molecular Weight (calculated) 19135.20 Da
IEP (calculated) 8.47
GRAVY (calculated) -0.18
Length 173 amino acids
Sequence (TAIR10)
(BLAST)
001: MAASVDPLVV GRVIGDVLDM FIPTANMSVY FGPKHITNGC EIKPSTAVNP PKVNISGHSD ELYTLVMTDP DAPSPSEPNM REWVHWIVVD IPGGTNPSRG
101: KEILPYMEPR PPVGIHRYIL VLFRQNSPVG LMVQQPPSRA NFSTRMFAGH FDLGLPVATV YFNAQKEPAS RRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)