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AT4G22610.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT4G22520.1); Has 467 Blast hits to 467 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 467; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AF375408EMBL:AL033545EMBL:AL161557EMBL:AY088298
EMBL:AY129479EMBL:CP002687EnsemblPlants:AT4G22610EnsemblPlants:AT4G22610.1
entrez:828357GeneID:828357GO:GO:0008233Gramene:AT4G22610.1
hmmpanther:PTHR31731HOGENOM:HOG000237797IntAct:Q9SUV8InterPro:IPR016140
InterPro:IPR027923KEGG:ath:AT4G22610OMA:ASVCICNPfam:PF14547
PhylomeDB:Q9SUV8PIR:T05455Proteomes:UP000006548RefSeq:NP_193992.1
SMART:SM00499SMR:Q9SUV8STRING:3702.AT4G22610.1SUPFAM:SSF47699
TAIR:AT4G22610UniGene:At.43045UniProt:Q9SUV8
Coordinates (TAIR10) chr4:-:11902165..11902533
Molecular Weight (calculated) 13189.00 Da
IEP (calculated) 4.85
GRAVY (calculated) 0.47
Length 122 amino acids
Sequence (TAIR10)
(BLAST)
001: MASKNTTAFF LTINLILFGF TVAQPPTCPR DIEACSNVFG LGRILNYQTV RPCCTLVDGL DAYVASVCIC DSIKIYGISY PFTVGLVQVL SLCGADYPPP
101: GFRCRENEIS VLSYNNGASM AL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)