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AT3G05950.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RmlC-like cupins superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RmlC-like cupins superfamily protein; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: sperm cell, male gametophyte, root, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT3G04200.1); Has 1545 Blast hits to 1539 proteins in 111 species: Archae - 0; Bacteria - 53; Metazoa - 0; Fungi - 32; Plants - 1447; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJA4eggNOG:ENOG410YERYEMBL:AC012393EMBL:AC013454
EMBL:AK229153EMBL:CP002686EnsemblPlants:AT3G05950EnsemblPlants:AT3G05950.1
entrez:819765Gene3D:2.60.120.10GeneID:819765Genevisible:Q9SFF9
GO:GO:0030145GO:GO:0045735GO:GO:0048046Gramene:AT3G05950.1
hmmpanther:PTHR31238hmmpanther:PTHR31238:SF44HOGENOM:HOG000235000InParanoid:Q9SFF9
InterPro:IPR001929InterPro:IPR006045InterPro:IPR011051InterPro:IPR014710
InterPro:IPR019780KEGG:ath:AT3G05950OMA:FQVNVGRPaxDb:Q9SFF9
Pfam:PF00190Pfam:Q9SFF9Pfscan:PS51257PhylomeDB:Q9SFF9
PRIDE:Q9SFF9PRINTS:PR00325PRO:PR:Q9SFF9PROSITE:PS00725
ProteinModelPortal:Q9SFF9Proteomes:UP000006548RefSeq:NP_187246.1scanprosite:PS00725
SMART:SM00835SMR:Q9SFF9SUPFAM:SSF51182TAIR:AT3G05950
UniGene:At.40590UniProt:Q9SFF9
Coordinates (TAIR10) chr3:-:1781130..1781964
Molecular Weight (calculated) 24737.70 Da
IEP (calculated) 6.93
GRAVY (calculated) 0.21
Length 229 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGFLRFLVA KAILLALASS FVSCYDPSPL QDFCVAVDDA SGVFVNGKFC KDPKYVKAED FFTSGLNIAG NTINRVGSNV TNVNVDKIPG LNTLGVSLVR
101: IDFAPGGQNP PHTHPRATEI LVVVEGTLLV GFVTSNQDNN RLFSKVLYPG DVFVFPIGMI HFQVNVGRTN AVAFAGLGSQ NPGTITIADA VFGSKPSIMP
201: EILAKAFQLD VNVVKYLEAR FSSNYDRHY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)