AT2G29330.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 0.988 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : tropinone reductase | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
tropinone reductase (TRI); FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; EXPRESSED IN: embryo, hypocotyl, root; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G30670.1); Has 116310 Blast hits to 116100 proteins in 3541 species: Archae - 956; Bacteria - 76794; Metazoa - 4526; Fungi - 5851; Plants - 2490; Viruses - 5; Other Eukaryotes - 25688 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:+:12594604..12596196 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 27663.10 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.68 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.15 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 260 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MDKRWSLQGL TALVTGGASG IGHAIVEELA GFGAKIHVCD ISKTLLNQSL SEWEKKGFQV SGSVCDASNR LERETLMQTV TTIFDGKLNI LVNNVGTIRT 101: KPTIEYEAED FSFLISTNLE SAYHLSQLSH PLLKASGNGI ITFISSAAGI VSFDAASIYG LTKGALNQLA RNLACEWAKD GIRANAVAPN FITTALAKPF 201: LEDAGFNEIL SSRTPLGRAG EPREVASLVA FLCLPAASYI TGQTICVDGG LTVNGFSYQP |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)