suba logo
AT2G29330.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 0.988
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : tropinone reductase
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
tropinone reductase (TRI); FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; EXPRESSED IN: embryo, hypocotyl, root; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G30670.1); Has 116310 Blast hits to 116100 proteins in 3541 species: Archae - 956; Bacteria - 76794; Metazoa - 4526; Fungi - 5851; Plants - 2490; Viruses - 5; Other Eukaryotes - 25688 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G29330-MONOMEREC:1.1.1.-eggNOG:COG1028eggNOG:KOG0725
EMBL:AC004561EMBL:AK227484EMBL:BT005864EMBL:CP002685
EnsemblPlants:AT2G29330EnsemblPlants:AT2G29330.1entrez:817482Gene3D:3.40.50.720
GeneID:817482Genevisible:Q9ZW16GO:GO:0016491Gramene:AT2G29330.1
hmmpanther:PTHR24322hmmpanther:PTHR24322:SF623IntAct:Q9ZW16InterPro:IPR002347
InterPro:IPR016040KEGG:ath:AT2G29330KO:K08081OMA:EIKAMGS
PANTHER:PTHR24322PaxDb:Q9ZW16Pfam:PF00106Pfam:Q9ZW16
PhylomeDB:Q9ZW16PIR:A84695PRIDE:Q9ZW16PRINTS:PR00080
PRINTS:PR00081PRO:PR:Q9ZW16ProteinModelPortal:Q9ZW16Proteomes:UP000006548
RefSeq:NP_180494.1SMR:Q9ZW16STRING:3702.AT2G29330.1SUPFAM:SSF51735
TAIR:AT2G29330tair10-symbols:TRIUniGene:At.38489UniProt:Q9ZW16
Coordinates (TAIR10) chr2:+:12594604..12596196
Molecular Weight (calculated) 27663.10 Da
IEP (calculated) 5.68
GRAVY (calculated) 0.15
Length 260 amino acids
Sequence (TAIR10)
(BLAST)
001: MDKRWSLQGL TALVTGGASG IGHAIVEELA GFGAKIHVCD ISKTLLNQSL SEWEKKGFQV SGSVCDASNR LERETLMQTV TTIFDGKLNI LVNNVGTIRT
101: KPTIEYEAED FSFLISTNLE SAYHLSQLSH PLLKASGNGI ITFISSAAGI VSFDAASIYG LTKGALNQLA RNLACEWAKD GIRANAVAPN FITTALAKPF
201: LEDAGFNEIL SSRTPLGRAG EPREVASLVA FLCLPAASYI TGQTICVDGG LTVNGFSYQP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)