suba logo
AT1G14160.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 0.861
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Uncharacterised protein family (UPF0497)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Uncharacterised protein family (UPF0497); CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT5G15290.1); Has 565 Blast hits to 565 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 565; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JNPTeggNOG:ENOG41119BEEMBL:AC007576EMBL:AK117303
EMBL:BT006211EMBL:CP002684EnsemblPlants:AT1G14160EnsemblPlants:AT1G14160.1
entrez:837975GeneID:837975GO:GO:0005829GO:GO:0005886
GO:GO:0016021GO:GO:0016226GO:GO:0051536Gramene:AT1G14160.1
hmmpanther:PTHR11615hmmpanther:PTHR11615:SF81HOGENOM:HOG000237690InParanoid:Q9XI72
InterPro:IPR006459InterPro:IPR006702KEGG:ath:AT1G14160OMA:GFCERIS
PaxDb:Q9XI72Pfam:PF04535Pfam:Q9XI72PhylomeDB:Q9XI72
PIR:B86275PRO:PR:Q9XI72Proteomes:UP000006548RefSeq:NP_172868.1
TAIR:AT1G14160TIGRfam:TIGR01569TIGRFAMs:TIGR01569TMHMM:TMhelix
UniGene:At.46769UniGene:At.47475UniProt:Q9XI72
Coordinates (TAIR10) chr1:-:4840798..4841660
Molecular Weight (calculated) 22404.50 Da
IEP (calculated) 7.04
GRAVY (calculated) 0.57
Length 209 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEAKHNEAE EAQGIEAREA KQIEAGETSR SSRKLITFEP KLVINKGISV LGFVLRLFAV FGTIGSALAM GTTHESVVSL SQLVLLKVKY SDLPTLMFFV
101: VANAISGGYL VLSLPVSIFH IFSTQAKTSR IILLVVDTVM LALVSSGASA ATATVYLAHE GNTTANWPPI CQQFDGFCER ISGSLIGSFC AVILLMLIVI
201: NSAISLSRH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)