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AT3G05920.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Heavy metal transport/detoxification superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT5G26690.1); Has 4471 Blast hits to 2060 proteins in 274 species: Archae - 6; Bacteria - 658; Metazoa - 586; Fungi - 145; Plants - 2171; Viruses - 410; Other Eukaryotes - 495 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2608eggNOG:KOG1603EMBL:AC012393EMBL:AC013454
EMBL:AK117419EMBL:BT004924EMBL:CP002686EnsemblPlants:AT3G05920
EnsemblPlants:AT3G05920.1entrez:819761GeneID:819761GO:GO:0030001
GO:GO:0046872Gramene:AT3G05920.1hmmpanther:PTHR22814hmmpanther:PTHR22814:SF5
InterPro:IPR006121KEGG:ath:AT3G05920OMA:PPKHVCKPfam:PF00403
PhylomeDB:Q9SFF7Proteomes:UP000006548RefSeq:NP_566264.1SMR:Q9SFF7
STRING:3702.AT3G05920.1SUPFAM:SSF55008TAIR:AT3G05920UniGene:At.40596
UniProt:Q9SFF7
Coordinates (TAIR10) chr3:-:1768991..1769522
Molecular Weight (calculated) 13435.50 Da
IEP (calculated) 7.71
GRAVY (calculated) -0.26
Length 126 amino acids
Sequence (TAIR10)
(BLAST)
001: MTVKKVEIKV DINCGKCNSA IMEAVTEIEG VNHISLDEGN SILTVVGTMD PVCVATRLKK IKQKPVIISV GPPPKPPEPP KPPEPEKPKP PPAPEPPKHV
101: CKPPYCNSCD VVSVTTYESG SGCTIL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)