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AT3G11550.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Uncharacterised protein family (UPF0497)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Uncharacterised protein family (UPF0497); CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT5G06200.1); Has 610 Blast hits to 610 proteins in 22 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 608; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
DIP:DIP-59178NeggNOG:ENOG410JBUMeggNOG:ENOG411190ZEMBL:AC008153
EMBL:BT010843EMBL:BT012612EMBL:CP002686EnsemblPlants:AT3G11550
EnsemblPlants:AT3G11550.1entrez:820328GeneID:820328Genevisible:Q9CAX3
GO:GO:0005829GO:GO:0005886GO:GO:0007043GO:GO:0016021
GO:GO:0016226GO:GO:0042545GO:GO:0042803GO:GO:0048226
GO:GO:0051536Gramene:AT3G11550.1hmmpanther:PTHR11615hmmpanther:PTHR11615:SF116
HOGENOM:HOG000237690InParanoid:Q9CAX3InterPro:IPR006459InterPro:IPR006702
KEGG:ath:AT3G11550OMA:ARDHTTSPaxDb:Q9CAX3Pfam:PF04535
Pfam:Q9CAX3PhylomeDB:Q9CAX3PRIDE:Q9CAX3PRO:PR:Q9CAX3
ProteinModelPortal:Q9CAX3Proteomes:UP000006548RefSeq:NP_187762.1STRING:3702.AT3G11550.1
TAIR:AT3G11550TIGRfam:TIGR01569TIGRFAMs:TIGR01569TMHMM:TMhelix
UniGene:At.43737UniProt:Q9CAX3
Coordinates (TAIR10) chr3:+:3638262..3639052
Molecular Weight (calculated) 21483.10 Da
IEP (calculated) 6.78
GRAVY (calculated) 0.67
Length 204 amino acids
Sequence (TAIR10)
(BLAST)
001: MKNESTFIDV PAESSSAMKG KAPLIGVARD HTTSGSGGYN RGLAIFDFLL RLAAIVAALA AAATMGTSDE TLPFFTQFLQ FEASYDDLPT FQFFVIAMAL
101: VGGYLVLSLP ISVVTILRPL ATAPRLLLLV LDTGVLALNT AAASSAAAIS YLAHSGNQNT NWLPICQQFG DFCQKSSGAV VSAFVSVVFF TILVVISGVA
201: LKRH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)