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AT2G39430.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.989
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Disease resistance-responsive (dirigent-like protein) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Disease resistance-responsive (dirigent-like protein) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: lignan biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: leaf apex, hypocotyl, root, petiole, leaf; EXPRESSED DURING: LP.04 four leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Plant disease resistance response protein (InterPro:IPR004265); BEST Arabidopsis thaliana protein match is: Disease resistance-responsive (dirigent-like protein) family protein (TAIR:AT3G55230.1); Has 728 Blast hits to 728 proteins in 43 species: Archae - 2; Bacteria - 4; Metazoa - 2; Fungi - 4; Plants - 715; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IWJQeggNOG:ENOG410YFRAEMBL:AC004218EMBL:BT010722
EMBL:BT011589EMBL:CP002685EnsemblPlants:AT2G39430EnsemblPlants:AT2G39430.1
entrez:818528GeneID:818528Genevisible:O80630GO:GO:0048046
Gramene:AT2G39430.1hmmpanther:PTHR21495hmmpanther:PTHR21495:SF51HOGENOM:HOG000237511
InParanoid:O80630InterPro:IPR004265KEGG:ath:AT2G39430OMA:ALHITIF
PaxDb:O80630Pfam:O80630Pfam:PF03018PhylomeDB:O80630
PIR:T00553PRIDE:O80630PRO:PR:O80630ProteinModelPortal:O80630
Proteomes:UP000006548RefSeq:NP_181475.1SMR:O80630STRING:3702.AT2G39430.1
TAIR:AT2G39430UniGene:At.27571UniGene:At.74097UniProt:O80630
Coordinates (TAIR10) chr2:+:16463422..16464390
Molecular Weight (calculated) 33763.50 Da
IEP (calculated) 4.41
GRAVY (calculated) 0.03
Length 322 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKALHITIF LFLISSNLLA FINSARLLDE IQPQPQLVPT GQIPTVAPTE AEEEDGTDDN PGLATTTTTA SAVTVPAGPA EATEPLLEFF MHDVLGGSHP
101: SARVVTGIVA QTEVNGIPFS KASNSIFPVD NGVPLVNSNN INSVINPNTA PLLTGLGGAQ TSTVIQNTNG NSNDALSANS LPFVTAGNLP PGAALQHLMF
201: GTITVVDDEL TESHELGSAV IGRAQGFYLA SSLDGTSQTL SLTVLLHGEH DQHDTLDDAI SFFGVHRTAS HASQIAVIGG TGKFEHAKGY AIVETLHNQD
301: NQHITDGQDT ILHFSVYLTY KA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)