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AT4G28890.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: root stele, root endodermis, hypocotyl, root, primary root differentiation zone; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G20030.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
EC:6.3.2.-eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AL078469
EMBL:AL161573EMBL:BT015731EMBL:BT020178EMBL:BX828195
EMBL:CP002687EMBL:DQ059125EnsemblPlants:AT4G28890EnsemblPlants:AT4G28890.1
entrez:829010Gene3D:3.30.40.10GeneID:829010Genevisible:Q5XF85
GO:GO:0004842GO:GO:0008270GO:GO:0016021GO:GO:0016567
GO:GO:0016874Gramene:AT4G28890.1hmmpanther:PTHR14155hmmpanther:PTHR14155:SF95
HOGENOM:HOG000034165InParanoid:Q5XF85InterPro:IPR001841InterPro:IPR013083
KEGG:ath:AT4G28890KO:K10664OMA:QINTTHQPaxDb:Q5XF85
Pfam:PF13639Pfam:Q5XF85Pfscan:PS50089PhylomeDB:Q5XF85
PIR:T08944PRIDE:Q5XF85PRO:PR:Q5XF85PROSITE:PS50089
ProteinModelPortal:Q5XF85Proteomes:UP000006548RefSeq:NP_194618.3SMART:SM00184
SMR:Q5XF85SUPFAM:SSF57850TAIR:AT4G28890TMHMM:TMhelix
UniGene:At.28216UniPathway:UPA00143UniProt:Q5XF85
Coordinates (TAIR10) chr4:-:14256437..14257735
Molecular Weight (calculated) 49376.70 Da
IEP (calculated) 7.80
GRAVY (calculated) -0.46
Length 432 amino acids
Sequence (TAIR10)
(BLAST)
001: MYQIFFFFLP LLHSYASAQT PPPFRNGDLV ANFEPSLAVV TGVLAIMFAL TFVLLVYAKC CHIDLRSGSG DRRRHDRRLR QGIFFNRSTA SSDRFSGLDK
101: TAIESLPLFR FSALKGSKQG LDCSVCLSKF ESVEILRLLP KCRHAFHIGC IDQWLEQHAT CPLCRDRVSM EEDSSVLTNG NSFRFLNQSE IREDSSLELY
201: IEREEEEERI HREELSGSSR FSIGESFRKI LKLGNKEKTL LDEHVNDKDE KKLMHKFNHR IVVSDVVFKN RWSNVSSSDL MFLNSEMVNS ISSERFSSLD
301: HVKRGDEEDQ IGILRIKEEM EAKRMLENKL TSMTTMFSSE NGDSGSKSRS VMIEPGRRSV SDITAVPRLS ISIHGDCSGS AAETASALQN GGNETEERRR
401: RLWLPIARKT AQWFANREKR SQINTTHQHF DV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)