suba logo
AT1G08990.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
golgi 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : plant glycogenin-like starch initiation protein 5
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
plant glycogenin-like starch initiation protein 5 (PGSIP5); FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: plant glycogenin-like starch initiation protein 4 (TAIR:AT1G54940.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
EC:2.4.1.-eggNOG:COG5597eggNOG:KOG1950EMBL:AC000106
EMBL:BX815902EMBL:CP002684EnsemblPlants:AT1G08990EnsemblPlants:AT1G08990.1
entrez:837420ExpressionAtlas:F4HZC3Gene3D:3.90.550.10GeneID:837420
Genevisible:F4HZC3GO:GO:0000139GO:GO:0005794GO:GO:0016021
GO:GO:0016757GO:GO:0046872GO:GO:0071555Gramene:AT1G08990.1
hmmpanther:PTHR11183hmmpanther:PTHR11183:SF51InParanoid:F4HZC3InterPro:IPR002495
InterPro:IPR029044iPTMnet:F4HZC3KEGG:ath:AT1G08990OMA:KVYDKMP
PaxDb:F4HZC3Pfam:F4HZC3Pfam:PF01501PIR:G86221
PRIDE:F4HZC3PRO:PR:F4HZC3ProteinModelPortal:F4HZC3Proteomes:UP000006548
Reactome:R-ATH-5357572Reactome:R-ATH-70221RefSeq:NP_172373.3SMR:F4HZC3
STRING:3702.AT1G08990.1SUPFAM:SSF53448TAIR:AT1G08990tair10-symbols:PGSIP5
TMHMM:TMhelixUniGene:At.42246UniProt:F4HZC3UniProt:W8QPB2
Coordinates (TAIR10) chr1:+:2888753..2890753
Molecular Weight (calculated) 65636.50 Da
IEP (calculated) 9.79
GRAVY (calculated) -0.33
Length 566 amino acids
Sequence (TAIR10)
(BLAST)
001: MGAKSKSSST RFFMFYLILI SLSFLGLLLN FKPLFLLNPM IASPSIVEIR YSLPEPVKRT PIWLRLIRNY LPDEKKIRVG LLNIAENERE SYEASGTSIL
101: ENVHVSLDPL PNNLTWTSLF PVWIDEDHTW HIPSCPEVPL PKMEGSEADV DVVVVKVPCD GFSEKRGLRD VFRLQVNLAA ANLVVESGRR NVDRTVYVVF
201: IGSCGPMHEI FRCDERVKRV GDYWVYRPDL TRLKQKLLMP PGSCQIAPLG QGEAWIQDKN RNLTSEKTTL SSFTAQRVAY VTLLHSSEVY VCGAIALAQS
301: IRQSGSTKDM ILLHDDSITN ISLIGLSLAG WKLRRVERIR SPFSKKRSYN EWNYSKLRVW QVTDYDKLVF IDADFIIVKN IDYLFSYPQL SAAGNNKVLF
401: NSGVMVLEPS ACLFEDLMLK SFKIGSYNGG DQGFLNEYFV WWHRLSKRLN TMKYFGDESR HDKARNLPEN LEGIHYLGLK PWRCYRDYDC NWDLKTRRVY
501: ASESVHARWW KVYDKMPKKL KGYCGLNLKM EKNVEKWRKM AKLNGFPENH WKIRIKDPRK KNRLSQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)