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AT4G37070.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.981
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:16635983 (2006): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein
Curator
Summary (TAIR10)
Patatin-related phospholipase A. Expressed strongly and exclusively in roots. AtplaIVA-null mutants have reduced lateral root development. Phosphorylation by calcium-dependent protein kinases in vitro enhances its activity.
Computational
Description (TAIR10)
PLP1; CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), Patatin (InterPro:IPR002641); BEST Arabidopsis thaliana protein match is: PATATIN-like protein 5 (TAIR:AT4G37060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
EC:3.1.1.-eggNOG:COG3621eggNOG:KOG0513EMBL:AJ002596
EMBL:AL161590EMBL:AY087005EMBL:BT029750EMBL:CP002687
EMBL:Z99707EnsemblPlants:AT4G37070EnsemblPlants:AT4G37070.1EnsemblPlants:AT4G37070.2
EnsemblPlants:AT4G37070.3entrez:829861ExpressionAtlas:O23179GeneID:829861
Genevisible:O23179GO:GO:0004620GO:GO:0005737GO:GO:0006952
GO:GO:0010311GO:GO:0016020GO:GO:0016042GO:GO:0047372
hmmpanther:PTHR32176HOGENOM:HOG000189358InParanoid:O23179InterPro:IPR002641
InterPro:IPR016035iPTMnet:O23179OMA:YEPITENPaxDb:O23179
Pfam:PF01734PhylomeDB:O23179PIR:H85437PIR:T52294
PRIDE:O23179PRO:PR:O23179ProteinModelPortal:O23179Proteomes:UP000006548
RefSeq:NP_568015.1RefSeq:NP_849511.1RefSeq:NP_849512.3STRING:3702.AT4G37070.2
SUPFAM:SSF52151TAIR:AT4G37070tair10-symbols:AtPLAIVAtair10-symbols:PLA IVA
tair10-symbols:PLP1UniGene:At.23952UniProt:F4JR94UniProt:Q8LBT5
Coordinates (TAIR10) chr4:-:17465167..17467058
Molecular Weight (calculated) 42132.80 Da
IEP (calculated) 6.27
GRAVY (calculated) -0.20
Length 383 amino acids
Sequence (TAIR10)
(BLAST)
001: MENKSPSKKN KPPSCGSLVT ILSLDGGGVR GIIAGVILAF LEKQLQELDG EEARLADYFD VIAGTSTGGL VTAMLTVPDE TGRPHFAAKD IVPFYLEHCP
101: KIFPQPTGVL ALLPKLPKLL SGPKYSGKYL RNLLSKLLGE TRLHQTLTNI VIPTFDIKKL QPTIFSSYQL LVDPSLDVKV SDICIGTSAA PTFFPPHYFS
201: NEDSQGNKTE FNLVDGAVTA NNPTLVAMTA VSKQIVKNNP DMGKLKPLGF DRFLVISIGT GSTKREEKYS AKKAAKWGII SWLYDDGSTP ILDITMESSR
301: DMIHYHSSVV FKALQSEDKY LRIDDDTLEG DVSTMDLATK SNLENLQKIG EKMLTNRVMQ MNIDTGVYEP VAENITNDEQ LKR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)