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AT4G16260.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:16356755 (2006): extracellular region
  • PMID:15593128 (2005): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Glycosyl hydrolase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: defense response to fungus, incompatible interaction, response to salt stress; LOCATED IN: cell wall, plasma membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-1,3-glucanase 1 (TAIR:AT3G57270.1); Has 2169 Blast hits to 2154 proteins in 141 species: Archae - 0; Bacteria - 6; Metazoa - 5; Fungi - 22; Plants - 2121; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G16260-MONOMERCAZy:GH17EC:3.2.1.39eggNOG:ENOG410IH05
eggNOG:ENOG410YAHPEMBL:AL161543EMBL:AY064130EMBL:AY087106
EMBL:AY143867EMBL:CP002687EMBL:Z97340EnsemblPlants:AT4G16260
EnsemblPlants:AT4G16260.1entrez:827320Gene3D:3.20.20.80GeneID:827320
Genevisible:Q8VZJ2GO:GO:0002215GO:GO:0005615GO:GO:0005618
GO:GO:0005774GO:GO:0005975GO:GO:0009651GO:GO:0009817
GO:GO:0042973GO:GO:0048046Gramene:AT4G16260.1hmmpanther:PTHR32227
hmmpanther:PTHR32227:SF125HOGENOM:HOG000238220InterPro:IPR000490InterPro:IPR013781
InterPro:IPR017853KEGG:ath:AT4G16260OMA:FRQNNIRPaxDb:Q8VZJ2
Pfam:PF00332PhylomeDB:Q8VZJ2PIR:C71429PROSITE:PS00587
ProteinModelPortal:Q8VZJ2Proteomes:UP000006548RefSeq:NP_193361.4scanprosite:PS00587
SMR:Q8VZJ2STRING:3702.AT4G16260.1SUPFAM:SSF51445TAIR:AT4G16260
UniGene:At.22570UniProt:Q8VZJ2
Coordinates (TAIR10) chr4:-:9200180..9201441
Molecular Weight (calculated) 37713.60 Da
IEP (calculated) 6.81
GRAVY (calculated) -0.13
Length 344 amino acids
Sequence (TAIR10)
(BLAST)
001: MTTLFLLIAL FITTILNPTS GESVGVCYGM MGNNLPSQSD TIALFRQNNI RRVRLYDPNQ AALNALRNTG IEVIIGVPNT DLRSLTNPSS ARSWLQNNVL
101: NYYPAVSFKY IAVGNEVSPS NGGDVVLPAM RNVYDALRGA NLQDRIKVST AIDMTLIGNS FPPSSGEFRG DVRWYIDPVI GFLTSTNSAL LANIYPYFSY
201: VDNPRDISLS YALFTSPSVV VWDGSRGYQN LFDALLDVVY SAVERSGGGS LPVVVSESGW PSNGGNAASF DNARAFYTNL ASRVRENRGT PKRPGRGVET
301: YLFAMFDENQ KSPEIEKNFG LFFPNKQPKF PITFSAARDG TAVE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)