suba logo
AT5G53980.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : homeobox protein 52
Curator
Summary (TAIR10)
Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.
Computational
Description (TAIR10)
homeobox protein 52 (HB52); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to blue light, regulation of transcription, DNA-dependent, response to absence of light; LOCATED IN: nucleus; EXPRESSED IN: root, flower; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeobox, conserved site (InterPro:IPR017970), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox 3 (TAIR:AT5G15150.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z2UEeggNOG:KOG0483EMBL:AB007644EMBL:AK229211
EMBL:BT015927EMBL:BT021920EMBL:CP002688EnsemblPlants:AT5G53980
EnsemblPlants:AT5G53980.1entrez:835481Gene3D:1.10.10.60GeneID:835481
Genevisible:Q9FN29GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0009637GO:GO:0009646GO:GO:0043565Gramene:AT5G53980.1
hmmpanther:PTHR24326hmmpanther:PTHR24326:SF257HOGENOM:HOG000029156InParanoid:Q9FN29
InterPro:IPR001356InterPro:IPR009057InterPro:IPR017970KEGG:ath:AT5G53980
ncoils:CoilOMA:DYNTLQVPaxDb:Q9FN29Pfam:PF00046
Pfam:Q9FN29Pfscan:PS50071PhylomeDB:Q9FN29PRIDE:Q9FN29
PRO:PR:Q9FN29PROSITE:PS00027PROSITE:PS50071ProteinModelPortal:Q9FN29
Proteomes:UP000006548RefSeq:NP_200209.1scanprosite:PS00027SMART:SM00389
SMR:Q9FN29STRING:3702.AT5G53980.1SUPFAM:SSF46689TAIR:AT5G53980
tair10-symbols:ATHB52tair10-symbols:HB52UniGene:At.29523UniProt:Q9FN29
Coordinates (TAIR10) chr5:+:21914087..21914557
Molecular Weight (calculated) 17935.00 Da
IEP (calculated) 7.99
GRAVY (calculated) -0.88
Length 156 amino acids
Sequence (TAIR10)
(BLAST)
001: MENSQSQGKN KKKRLTQDQV RQLEKCFTMN KKLEPDLKLQ LSNQLGLPQR QVAVWFQNKR ARFKTQSLEV QHCTLQSKHE AALSDKAKLE HQVQFLQDEL
101: KRARNQLALF TNQDSPVDNS NLGSCDEDHD DQVVVFDELY ACFVSNGHGS SSTSWV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)