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AT1G53180.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15115.1); Has 58 Blast hits to 56 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 4; Plants - 29; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JQEBeggNOG:ENOG4111CS1EMBL:AY063797EMBL:BT020247
EMBL:CP002684EnsemblPlants:AT1G53180EnsemblPlants:AT1G53180.1entrez:841752
GeneID:841752Gramene:AT1G53180.1hmmpanther:PTHR33785hmmpanther:PTHR33785:SF1
KEGG:ath:AT1G53180OMA:EDYWFFEProteomes:UP000006548RefSeq:NP_175726.1
STRING:3702.AT1G53180.1TAIR:AT1G53180UniGene:At.27197UniProt:Q8VZW0
Coordinates (TAIR10) chr1:+:19831582..19832727
Molecular Weight (calculated) 40428.70 Da
IEP (calculated) 10.25
GRAVY (calculated) -0.95
Length 358 amino acids
Sequence (TAIR10)
(BLAST)
001: MDHVSSSELL IDDLLEDYWF FENLFTRRSR GLRYCHSDPY PSSSSTSTSP EKMGDSDIGK VLEASTGRSL IRASSIDSRE GGSQTKLTGR FSEKIRVQEQ
101: RQVGSSLQKK EHVVLPKSGS RSAPGKIQEA STKRGLIRAP SLPPQIEKRE MDREAKKMIN KLTRQFSEKI RVLEPTRPGE HFLQKKETIA RDKGITESSR
201: SNKTGSSSSY SSVKISLQRT QTMPNNMGRE EDNEEDEFED QESDSRMGFL IREALASSHY VPKVSNNQRQ RPPRSLRLED TAMVKQGGSS PKTLRKTLSS
301: VETTKEIQRL KGYDQLVEPR VASGLATPPR VPKDSSKEMK DQIKFWARAV ATNVRQEC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)