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AT3G24450.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.680
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Heavy metal transport/detoxification superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: copper ion binding, metal ion binding; INVOLVED IN: copper ion transport, metal ion transport; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Chloroplast-targeted copper chaperone protein (TAIR:AT2G37390.1); Has 769 Blast hits to 747 proteins in 41 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 2; Plants - 757; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2608eggNOG:KOG1603EMBL:AF370237EMBL:AP002048
EMBL:AY062958EMBL:CP002686EnsemblPlants:AT3G24450EnsemblPlants:AT3G24450.1
entrez:822035GeneID:822035GO:GO:0030001GO:GO:0046872
Gramene:AT3G24450.1hmmpanther:PTHR22814hmmpanther:PTHR22814:SF104InterPro:IPR006121
KEGG:ath:AT3G24450OMA:NACACIHPfam:PF00403Pfscan:PS50846
PhylomeDB:Q9LHF4PROSITE:PS50846Proteomes:UP000006548RefSeq:NP_566747.1
SMR:Q9LHF4STRING:3702.AT3G24450.1SUPFAM:SSF55008TAIR:AT3G24450
UniGene:At.6777UniProt:Q9LHF4
Coordinates (TAIR10) chr3:-:8880286..8881611
Molecular Weight (calculated) 15864.50 Da
IEP (calculated) 8.29
GRAVY (calculated) -0.23
Length 140 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKLQKIGRV WDCLFLPTNQ CSCFCLNTLG DEEEEFEKEP LIDSSTEKSG KVMRLKDVVA ADHRQTLAFH LKPKIVELKV SMHCYGCAKK VEKHISKLDG
101: VTWYKVELES KKVVVKGNIL PVDVLESICK VKNAQLWSSP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)