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AT3G22540.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plasma membrane 0.942
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1677)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1677); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1677, plant (InterPro:IPR012876); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1677) (TAIR:AT4G14819.1); Has 245 Blast hits to 245 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 245; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J11QeggNOG:ENOG410YP5YEMBL:AP000731EMBL:AY600578
EMBL:AY924774EMBL:BT014798EMBL:BT015694EMBL:CP002686
EnsemblPlants:AT3G22540EnsemblPlants:AT3G22540.1entrez:821825GeneID:821825
Gramene:AT3G22540.1hmmpanther:PTHR33108hmmpanther:PTHR33108:SF2HOGENOM:HOG000237618
InterPro:IPR012876KEGG:ath:AT3G22540OMA:RKMTTVDPfam:PF07911
PhylomeDB:Q9LJ92Proteomes:UP000006548RefSeq:NP_188893.1TAIR:AT3G22540
UniGene:At.49621UniProt:Q9LJ92
Coordinates (TAIR10) chr3:-:7984233..7984565
Molecular Weight (calculated) 12511.90 Da
IEP (calculated) 8.28
GRAVY (calculated) -0.64
Length 110 amino acids
Sequence (TAIR10)
(BLAST)
001: MEIESVRCEC CGLMEDCTQD YISEVKSNFD NKWLCGLCSE AVRDEVSRRK MTTVDEAVKA HVSFCGKFKK DNPAVHVADG MRQMLRRRSG ELTNSSTSKK
101: FGRSNTTKLY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)