suba logo
AT2G14900.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Gibberellin-regulated family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Gibberellin-regulated family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to gibberellin stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Gibberellin regulated protein (InterPro:IPR003854); BEST Arabidopsis thaliana protein match is: Gibberellin-regulated family protein (TAIR:AT5G59845.1); Has 474 Blast hits to 474 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 474; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JEU2eggNOG:ENOG4111623EMBL:AC005396EMBL:BT002904
EMBL:BT004423EMBL:CP002685EnsemblPlants:AT2G14900EnsemblPlants:AT2G14900.1
entrez:815979GeneID:815979Genevisible:O82328GO:GO:0005576
GO:GO:0009740Gramene:AT2G14900.1hmmpanther:PTHR23201hmmpanther:PTHR23201:SF15
HOGENOM:HOG000240234InParanoid:O82328InterPro:IPR003854KEGG:ath:AT2G14900
OMA:HECACYRPaxDb:O82328Pfam:O82328Pfam:PF02704
PhylomeDB:O82328PIR:G84522PRIDE:O82328PRO:PR:O82328
ProteinModelPortal:O82328Proteomes:UP000006548RefSeq:NP_179096.1TAIR:AT2G14900
TMHMM:TMhelixUniGene:At.40482UniProt:O82328
Coordinates (TAIR10) chr2:+:6404210..6405043
Molecular Weight (calculated) 11381.90 Da
IEP (calculated) 8.43
GRAVY (calculated) -0.06
Length 108 amino acids
Sequence (TAIR10)
(BLAST)
001: MKIIVSILVL ASLLLISSSL ASATISDAFG SGAVAPAPQS KDGPALEKWC GQKCEGRCKE AGMKDRCLKY CGICCKDCQC VPSGTYGNKH ECACYRDKLS
101: SKGTPKCP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)