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AT1G62770.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant invertase/pectin methylesterase inhibitor superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant invertase/pectin methylesterase inhibitor superfamily protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: pectin methylesterase inhibitor 1 (TAIR:AT4G12390.1); Has 797 Blast hits to 790 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 797; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXHMeggNOG:ENOG41116V7EMBL:AC007190EMBL:CP002684
EnsemblPlants:AT1G62770EnsemblPlants:AT1G62770.1entrez:842576Gene3D:1.20.140.40
GeneID:842576GO:GO:0004857Gramene:AT1G62770.1hmmpanther:PTHR31080
hmmpanther:PTHR31080:SF2InterPro:IPR006501KEGG:00040+3.1.1.11KEGG:00500+3.1.1.11
KEGG:ath:AT1G62770OMA:CERSLMPPfam:PF04043PhylomeDB:Q9SI72
Proteomes:UP000006548RefSeq:NP_564802.1SMART:SM00856SMR:Q9SI72
STRING:3702.AT1G62770.1SUPFAM:SSF101148TAIR:AT1G62770TIGRfam:TIGR01614
TIGRFAMs:TIGR01614UniGene:At.43230unipathway:UPA00545UniProt:Q9SI72
Coordinates (TAIR10) chr1:-:23246085..23246836
Molecular Weight (calculated) 22685.50 Da
IEP (calculated) 9.89
GRAVY (calculated) -0.03
Length 204 amino acids
Sequence (TAIR10)
(BLAST)
001: MELKNTIFLV ILLSITILQS SSATPNRSES DQFIVSSCQT TQYPSLCVHT LSAYATKIRH NNDQDLAQTA LIISLARAKS VTIFVAKLTK ETPKFKRREY
101: LAIKDCIEVL GNSVDRLAQS VKELARAGHA VASEDFMWKM SNVQTWVSAA LTDETTCLDG FSERAMGGKV KRLIRYKVVH VAQVTSNALA LVNQFAEKRS
201: VKFP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)