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AT2G18060.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : vascular related NAC-domain protein 1
Curator
Summary (TAIR10)
Encodes a NAC-domain transcription factor. Expressed in the vascular tissue.
Computational
Description (TAIR10)
vascular related NAC-domain protein 1 (VND1); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 76 (TAIR:AT4G36160.1); Has 3025 Blast hits to 3020 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3025; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHWYeggNOG:ENOG410YBF6EMBL:AC006201EMBL:CP002685
EnsemblPlants:AT2G18060EnsemblPlants:AT2G18060.1entrez:816318GeneID:816318
Genevisible:Q9SL41GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0006355GO:GO:0007275GO:GO:0010200GO:GO:0043565
GO:GO:0044212GO:GO:0048759GO:GO:0071555GO:GO:1901348
GO:GO:1990110Gramene:AT2G18060.1hmmpanther:PTHR31989hmmpanther:PTHR31989:SF7
HOGENOM:HOG000237406InParanoid:Q9SL41IntAct:Q9SL41InterPro:IPR003441
KEGG:ath:AT2G18060OMA:KHEEMEMPaxDb:Q9SL41Pfam:PF02365
Pfam:Q9SL41Pfscan:PS51005PhylomeDB:Q9SL41PIR:G84559
PRIDE:Q9SL41PRO:PR:Q9SL41PROSITE:PS51005ProteinModelPortal:Q9SL41
Proteomes:UP000006548RefSeq:NP_179397.1SMR:Q9SL41STRING:3702.AT2G18060.1
SUPFAM:SSF101941TAIR:AT2G18060tair10-symbols:ANAC037tair10-symbols:VND1
UniGene:At.52795UniProt:Q9SL41
Coordinates (TAIR10) chr2:-:7848399..7850303
Molecular Weight (calculated) 42478.90 Da
IEP (calculated) 5.23
GRAVY (calculated) -0.82
Length 365 amino acids
Sequence (TAIR10)
(BLAST)
001: MEPMESCSVP PGFRFHPTDE ELVGYYLRKK IASQKIDLDV IRDIDLYRIE PWDLQEQCRI GYEEQNEWYF FSHKDKKYPT GTRTNRATMA GFWKATGRDK
101: AVYDKTKLIG MRKTLVFYKG RAPNGKKSDW IMHEYRLESD ENAPPQEEGW VVCRAFKKRA TGQAKNTETW SSSYFYDEVA PNGVNSVMDP IDYISKQQHN
201: IFGKGLMCKQ ELEGMVDGIN YIQSNQFIQL PQLQSPSLPL MKRPSSSMSI TSMDNNYNYK LPLADEESFE SFIRGEDRRK KKKQVMMTGN WRELDKFVAS
301: QLMSQEDNGT SSFAGHHIVN EDKNNNDVEM DSSMFLSERE EENRFVSEFL STNSDYDIGI CVFDN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)