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AT1G71930.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : vascular related NAC-domain protein 7
Curator
Summary (TAIR10)
Encodes a NAC-domain transcription factor with transcriptional activation activity that is involved in xylem formation. Induces transdifferentiation of various cells into protoxylem vessel elements. Located in the nucleus. Expression induced in the presence of auxin, cytokinin and brassinosteroids.
Computational
Description (TAIR10)
vascular related NAC-domain protein 7 (VND7); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: vascular related NAC-domain protein 1 (TAIR:AT2G18060.1); Has 3020 Blast hits to 3015 proteins in 84 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 3006; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IE2BeggNOG:ENOG410YB6IEMBL:AC021665EMBL:AY085424
EMBL:BT026447EMBL:CP002684EnsemblPlants:AT1G71930EnsemblPlants:AT1G71930.1
entrez:843524GeneID:843524Genevisible:Q9C8W9GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0007275
GO:GO:0009620GO:GO:0009733GO:GO:0009735GO:GO:0009737
GO:GO:0009741GO:GO:0010089GO:GO:0010628GO:GO:0042802
GO:GO:0042803GO:GO:0043565GO:GO:0044212GO:GO:0045491
GO:GO:0045893GO:GO:0046982GO:GO:0048759GO:GO:0050832
GO:GO:0071365GO:GO:0071555GO:GO:0090059Gramene:AT1G71930.1
hmmpanther:PTHR31989hmmpanther:PTHR31989:SF41HOGENOM:HOG000237406InParanoid:Q9C8W9
IntAct:Q9C8W9InterPro:IPR003441KEGG:ath:AT1G71930OMA:NCVDWRT
PaxDb:Q9C8W9Pfam:PF02365Pfam:Q9C8W9Pfscan:PS51005
PhylomeDB:Q9C8W9PIR:B96742PRIDE:Q9C8W9PRO:PR:Q9C8W9
PROSITE:PS51005ProteinModelPortal:Q9C8W9Proteomes:UP000006548RefSeq:NP_177338.1
SMR:Q9C8W9STRING:3702.AT1G71930.1SUPFAM:SSF101941TAIR:AT1G71930
tair10-symbols:ANAC030tair10-symbols:VND7UniGene:At.35148UniProt:Q9C8W9
Coordinates (TAIR10) chr1:+:27076205..27077829
Molecular Weight (calculated) 37428.60 Da
IEP (calculated) 6.51
GRAVY (calculated) -0.83
Length 324 amino acids
Sequence (TAIR10)
(BLAST)
001: MDNIMQSSMP PGFRFHPTEE ELVGYYLDRK INSMKSALDV IVEIDLYKME PWDIQARCKL GYEEQNEWYF FSHKDRKYPT GTRTNRATAA GFWKATGRDK
101: AVLSKNSVIG MRKTLVYYKG RAPNGRKSDW IMHEYRLQNS ELAPVQEEGW VVCRAFRKPI PNQRPLGYEP WQNQLYHVES SNNYSSSVTM NTSHHIGASS
201: SSHNLNQMLM SNNHYNPNNT SSSMHQYGNI ELPQLDSPSL SPSLGTNKDQ NESFEQEEEK SFNCVDWRTL DTLLETQVIH PHNPNILMFE TQSYNPAPSF
301: PSMHQSYNEV EANIHHSLGC FPDS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)