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AT5G62380.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : NAC-domain protein 101
Curator
Summary (TAIR10)
Encodes a NAC-domain transcription factor involved in xylem formation. Induces transdifferentiation of various cells into metaxylem vessel elements. Located in the nucleus. Expression induced in the presence of auxin, cytokinin and brassinosteroids.
Computational
Description (TAIR10)
NAC-domain protein 101 (NAC101); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC 007 (TAIR:AT1G12260.1); Has 3040 Blast hits to 3031 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3040; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JX4QeggNOG:ENOG41104AUEMBL:AB019235EMBL:BT026510
EMBL:CP002688EMBL:DQ056734EnsemblPlants:AT5G62380EnsemblPlants:AT5G62380.1
entrez:836359GeneID:836359Genevisible:Q9LVA1GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0007275
GO:GO:0009531GO:GO:0009620GO:GO:0009733GO:GO:0009735
GO:GO:0009737GO:GO:0009741GO:GO:0010089GO:GO:0010981
GO:GO:0042803GO:GO:0043068GO:GO:0043565GO:GO:0045491
GO:GO:0045893GO:GO:0048759GO:GO:0071555GO:GO:0090058
Gramene:AT5G62380.1hmmpanther:PTHR31989hmmpanther:PTHR31989:SF3HOGENOM:HOG000237406
InParanoid:Q9LVA1IntAct:Q9LVA1InterPro:IPR003441KEGG:ath:AT5G62380
OMA:GEEREWYPaxDb:Q9LVA1Pfam:PF02365Pfam:Q9LVA1
Pfscan:PS51005PhylomeDB:Q9LVA1PRIDE:Q9LVA1PRO:PR:Q9LVA1
PROSITE:PS51005ProteinModelPortal:Q9LVA1Proteomes:UP000006548RefSeq:NP_201044.1
SMR:Q9LVA1STRING:3702.AT5G62380.1SUPFAM:SSF101941TAIR:AT5G62380
tair10-symbols:ANAC101tair10-symbols:NAC101tair10-symbols:VND6UniGene:At.55682
UniProt:Q9LVA1
Coordinates (TAIR10) chr5:+:25050684..25051858
Molecular Weight (calculated) 39731.90 Da
IEP (calculated) 5.01
GRAVY (calculated) -0.86
Length 348 amino acids
Sequence (TAIR10)
(BLAST)
001: MESLAHIPPG YRFHPTDEEL VDYYLKNKVA FPGMQVDVIK DVDLYKIEPW DIQELCGRGT GEEREWYFFS HKDKKYPTGT RTNRATGSGF WKATGRDKAI
101: YSKQELVGMR KTLVFYKGRA PNGQKSDWIM HEYRLETDEN GPPHEEGWVV CRAFKKKLTT MNYNNPRTMM GSSSGQESNW FTQQMDVGNG NYYHLPDLES
201: PRMFQGSSSS SLSSLHQNDQ DPYGVVLSTI NATPTTIMQR DDGHVITNDD DHMIMMNTST GDHHQSGLLV NDDHNDQVMD WQTLDKFVAS QLIMSQEEEE
301: VNKDPSDNSS NETFHHLSEE QAATMVSMNA SSSSSPCSFY SWAQNTHT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)