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AT1G22440.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Zinc-binding alcohol dehydrogenase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Zinc-binding alcohol dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, zinc ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: GroES-like zinc-binding dehydrogenase family protein (TAIR:AT1G22430.2); Has 32607 Blast hits to 32587 proteins in 3168 species: Archae - 747; Bacteria - 20763; Metazoa - 1197; Fungi - 2370; Plants - 4104; Viruses - 3; Other Eukaryotes - 3423 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G22440-MONOMERBioGrid:24089EC:1.1.1.1eggNOG:COG1062
eggNOG:KOG0022EMBL:AC006551EMBL:BT015046EMBL:BT015637
EMBL:CP002684EnsemblPlants:AT1G22440EnsemblPlants:AT1G22440.1entrez:838850
Gene3D:3.40.50.720Gene3D:3.90.180.10GeneID:838850Genevisible:Q9SK87
GO:GO:0004022GO:GO:0005829GO:GO:0008270Gramene:AT1G22440.1
gramene_pathway:1.1.1.1gramene_pathway:1.1.1.22gramene_pathway:ETOH-ACETYLCOA-ANA-PWYgramene_pathway:PWY-3801
gramene_pathway:PWY-3821gramene_pathway:PWY-4821gramene_pathway:PWY-5486gramene_pathway:PWY-6333
gramene_pathway:PWY66-21hmmpanther:PTHR11695hmmpanther:PTHR11695:SF492HOGENOM:HOG000294674
InParanoid:Q9SK87InterPro:IPR002085InterPro:IPR002328InterPro:IPR011032
InterPro:IPR013149InterPro:IPR013154InterPro:IPR016040KEGG:ath:AT1G22440
KO:K00121OMA:ICGASTIPANTHER:PTHR11695PaxDb:Q9SK87
Pfam:PF00107Pfam:PF08240Pfam:Q9SK87PhylomeDB:Q9SK87
PIR:E86357PRIDE:Q9SK87PRO:PR:Q9SK87PROSITE:PS00059
ProteinModelPortal:Q9SK87Proteomes:UP000006548RefSeq:NP_173660.1scanprosite:PS00059
SMR:Q9SK87STRING:3702.AT1G22440.1SUPFAM:SSF50129SUPFAM:SSF51735
TAIR:AT1G22440UniGene:At.41601UniProt:Q9SK87
Coordinates (TAIR10) chr1:+:7922560..7924759
Molecular Weight (calculated) 42385.50 Da
IEP (calculated) 5.91
GRAVY (calculated) 0.07
Length 386 amino acids
Sequence (TAIR10)
(BLAST)
001: MDKASITEGK PIRCKAAILR KAGEPLVIEE IQVDPPQAYE VRIKILCTSL CHTDVTFWKL DSGPLARFPR ILGHEAVGVV ESIGEKVDGF KQGDVVLPVF
101: HPQCEECKEC ISPKSNWCTK YTNDYLSNTR RYGMTSRFKD SRGEDIHHFI FVSSFTEYTV VDIAHLVKIS PEIPVDIAAL LSCSVATGLG AAWKVADVEE
201: GSTVVIFGLG AVGLAVAEGV RLRGAAKIIG VDLNPAKFEI GKRFGITDFV NPALCGEKTI SEVIREMTDV GADYSFECIG LASLMEEAFK STRPGSGKTI
301: VLGMEQKALP ISLGSYDLLR GRTVCGTLFG GLKPKLDIPI LVDRYLKKEL NLEDLITHEL SFEEINKAFH LLAEGNSIRC IIWMDK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)