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AT4G18360.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
peroxisome 1.000
ASURE: peroxisome
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31871212 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24727099 (2014): mitochondrion
  • PMID:24130194 (2013): peroxisome
  • PMID:23750852 (2013): mitochondrion
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21841088 (2011): mitochondrion
  • PMID:21531424 (2011): plastid
  • PMID:18931141 (2008): peroxisome
  • PMID:17951448 (2007): peroxisome
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Aldolase-type TIM barrel family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Aldolase-type TIM barrel family protein; FUNCTIONS IN: glycolate oxidase activity, oxidoreductase activity, FMN binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), FMN-dependent alpha-hydroxy acid dehydrogenase, active site (InterPro:IPR008259), FMN-dependent dehydrogenase (InterPro:IPR000262), Alpha-hydroxy acid dehydrogenase, FMN-dependent (InterPro:IPR012133); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT3G14420.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G18360-MONOMERBioCyc:RETL1328306-WGS:GSTH-433-MONOMEREC:1.1.3.15eggNOG:COG1304
eggNOG:KOG0538EMBL:AL021710EMBL:AL161548EMBL:BT001945
EMBL:CP002687EnsemblPlants:AT4G18360EnsemblPlants:AT4G18360.1entrez:827563
Gene3D:3.20.20.70GeneID:827563Genevisible:O49506GO:GO:0005777
GO:GO:0009854GO:GO:0010181GO:GO:0010204GO:GO:0042742
GO:GO:0050665GO:GO:0052852GO:GO:0052853GO:GO:0052854
gramene_pathway:1.1.3.15gramene_pathway:PWY-181hmmpanther:PTHR10578hmmpanther:PTHR10578:SF70
HOGENOM:HOG000217463InParanoid:O49506InterPro:IPR000262InterPro:IPR008259
InterPro:IPR012133InterPro:IPR013785KEGG:ath:AT4G18360KO:K11517
OMA:DLGTMDKPaxDb:O49506Pfam:O49506Pfam:PF01070
Pfscan:PS51349PhylomeDB:O49506PIR:G85206PIR:T04532
PIRSF:PIRSF000138PRIDE:O49506PRO:PR:O49506PROSITE:PS00557
PROSITE:PS51349ProteinModelPortal:O49506Proteomes:UP000006548Reactome:R-ATH-389661
Reactome:R-ATH-390918RefSeq:NP_001078406.1RefSeq:NP_193570.1scanprosite:PS00557
SMR:O49506STRING:3702.AT4G18360.1SUPFAM:SSF51395TAIR:AT4G18360
UniGene:At.24604UniPathway:UPA00951UniProt:O49506
Coordinates (TAIR10) chr4:-:10146141..10148386
Molecular Weight (calculated) 40484.10 Da
IEP (calculated) 8.59
GRAVY (calculated) -0.01
Length 368 amino acids
Sequence (TAIR10)
(BLAST)
001: MEITNVMEYE KIAKEKLPKM VYDYYASGAE DQWTLQENRN AFSRILFRPR ILIDVSKIDV STTVLGFNIS MPIMIAPTAM QKMAHPDGEL ATARATSAAG
101: TIMTLSSWAT CSVEEVASTG PGIRFFQLYV YKDRNVVIQL VKRAEEAGFK AIALTVDTPR LGRRESDIKN RFALPRGLTL KNFEGLDLGK IDKTNDSGLA
201: SYVAGQVDQS LSWKDIKWLQ SITSLPILVK GVITAEDARI AVEYGAAGII VSNHGARQLD YVPATIVALE EVVKAVEGRI PVFLDGGVRR GTDVFKALAL
301: GASGVFVGRP SLFSLAADGE AGVRKMLQML RDEFELTMAL SGCRSLREIS RTHIKTDWDT PHYLSAKL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)