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AT4G13660.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.485
plasma membrane 0.254
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : pinoresinol reductase 2
Curator
Summary (TAIR10)
Encodes a pinoresinol reductase involved in lignan biosynthesis. Expressed strongly in roots and less strongly in stems. Shows preference for pinoresinol and not lariciresinol.
Computational
Description (TAIR10)
pinoresinol reductase 2 (PRR2); CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), NmrA-like (InterPro:IPR008030); BEST Arabidopsis thaliana protein match is: pinoresinol reductase 1 (TAIR:AT1G32100.1); Has 1530 Blast hits to 1530 proteins in 324 species: Archae - 16; Bacteria - 400; Metazoa - 3; Fungi - 451; Plants - 554; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G13660-MONOMERBioGrid:12297BRENDA:1.23.1.3EC:1.23.1.3
eggNOG:ENOG410IMJ7eggNOG:ENOG4111CCHEMBL:AL035528EMBL:AL161537
EMBL:BT002882EMBL:BT004406EMBL:CP002687EnsemblPlants:AT4G13660
EnsemblPlants:AT4G13660.1entrez:827000Gene3D:3.40.50.720GeneID:827000
Genevisible:Q9SVP6GO:GO:0009506GO:GO:0009807GO:GO:0010283
Gramene:AT4G13660.1hmmpanther:PTHR10366hmmpanther:PTHR10366:SF397HOGENOM:HOG000237415
InParanoid:Q9SVP6InterPro:IPR008030InterPro:IPR016040KEGG:ath:AT4G13660
OMA:HFRTHNIPaxDb:Q9SVP6Pfam:PF05368Pfam:Q9SVP6
PhylomeDB:Q9SVP6PIR:T05235PRIDE:Q9SVP6PRO:PR:Q9SVP6
ProteinModelPortal:Q9SVP6Proteomes:UP000006548RefSeq:NP_193102.1SMR:Q9SVP6
STRING:3702.AT4G13660.1SUPFAM:SSF51735TAIR:AT4G13660tair10-symbols:ATPRR2
tair10-symbols:PRR2UniGene:At.27534UniProt:Q9SVP6
Coordinates (TAIR10) chr4:+:7946283..7948252
Molecular Weight (calculated) 35417.50 Da
IEP (calculated) 6.14
GRAVY (calculated) -0.25
Length 317 amino acids
Sequence (TAIR10)
(BLAST)
001: MKETNFGEKT RVLVVGGTGS LGRRIVSACL AEGHETYVLQ RPEIGVDIEK VQLLLSFKRL GAHLVEGSFS DHQSLVSAVK QVDVVVSAMS GVHFRTHNIP
101: VQLKLVAAIK EAGNVKRFLP SEFGMDPSRM GHAMPPGSET FDQKMEIRNA IKAAGISHTY LVGACFAAYF GGNLSQMGTL FPPKNKVDIY GDGNVKVVFV
201: DEDDMAKYTA KTLNDPRTLN KTVYVRPTDN ILTQMELVQI WEKLTEKELE KTYVSGNDFL ADIEDKEISH QAGLGHFYHI YYEGCLTDHE VGDDEEATKL
301: YPDVKYKRMD EYLKIFV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)