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AT5G17330.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.848
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glutamate decarboxylase
Curator
Summary (TAIR10)
Encodes one of two isoforms of glutamate decarboxylase.
Computational
Description (TAIR10)
glutamate decarboxylase (GAD); FUNCTIONS IN: calmodulin binding, glutamate decarboxylase activity; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent decarboxylase (InterPro:IPR002129), Glutamate decarboxylase (InterPro:IPR010107), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: glutamate decarboxylase 4 (TAIR:AT2G02010.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G17330-MONOMERBioGrid:16875BRENDA:4.1.1.15EC:4.1.1.15
eggNOG:COG0076eggNOG:KOG1383EMBL:AB005238EMBL:AY094464
EMBL:BT001047EMBL:CP002688EMBL:U10034EnsemblPlants:AT5G17330
EnsemblPlants:AT5G17330.1entrez:831599EvolutionaryTrace:Q42521Gene3D:3.40.640.10
GeneID:831599Genevisible:Q42521GO:GO:0004351GO:GO:0005516
GO:GO:0005829GO:GO:0006536GO:GO:0030170GO:GO:0046686
Gramene:AT5G17330.1gramene_pathway:4.1.1.15gramene_pathway:PWY-4321hmmpanther:PTHR11999
hmmpanther:PTHR11999:SF92HOGENOM:HOG000070228InParanoid:Q42521InterPro:IPR002129
InterPro:IPR010107InterPro:IPR015421InterPro:IPR015424iPTMnet:Q42521
KEGG:00250+4.1.1.15KEGG:00410+4.1.1.15KEGG:00430+4.1.1.15KEGG:00650+4.1.1.15
KEGG:ath:AT5G17330KO:K01580MINT:MINT-8062431OMA:TIGICTI
PaxDb:Q42521PDB:3HBXPDBsum:3HBXPfam:PF00282
Pfam:Q42521PhylomeDB:Q42521PRIDE:Q42521PRO:PR:Q42521
ProteinModelPortal:Q42521Proteomes:UP000006548RefSeq:NP_197235.1SMR:Q42521
STRING:3702.AT5G17330.1SUPFAM:SSF53383TAIR:AT5G17330tair10-symbols:GAD
tair10-symbols:GAD1TIGRfam:TIGR01788TIGRFAMs:TIGR01788UniGene:At.25228
UniProt:Q42521
Coordinates (TAIR10) chr5:+:5711141..5714839
Molecular Weight (calculated) 57069.50 Da
IEP (calculated) 5.21
GRAVY (calculated) -0.25
Length 502 amino acids
Sequence (TAIR10)
(BLAST)
001: MVLSHAVSES DVSVHSTFAS RYVRTSLPRF KMPENSIPKE AAYQIINDEL MLDGNPRLNL ASFVTTWMEP ECDKLIMSSI NKNYVDMDEY PVTTELQNRC
101: VNMIAHLFNA PLEEAETAVG VGTVGSSEAI MLAGLAFKRK WQNKRKAEGK PVDKPNIVTG ANVQVCWEKF ARYFEVELKE VKLSEGYYVM DPQQAVDMVD
201: ENTICVAAIL GSTLNGEFED VKLLNDLLVE KNKETGWDTP IHVDAASGGF IAPFLYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWVIW RNKEDLPEEL
301: IFHINYLGAD QPTFTLNFSK GSSQVIAQYY QLIRLGHEGY RNVMENCREN MIVLREGLEK TERFNIVSKD EGVPLVAFSL KDSSCHTEFE ISDMLRRYGW
401: IVPAYTMPPN AQHITVLRVV IREDFSRTLA ERLVIDIEKV MRELDELPSR VIHKISLGQE KSESNSDNLM VTVKKSDIDK QRDIITGWKK FVADRKKTSG
501: IC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)