AT2G26290.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 0.993 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : root-specific kinase 1 | ||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
root-specific kinase 1 (ARSK1); CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT2G05940.1); Has 108143 Blast hits to 107246 proteins in 3118 species: Archae - 87; Bacteria - 12764; Metazoa - 39296; Fungi - 8859; Plants - 31456; Viruses - 319; Other Eukaryotes - 15362 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:-:11192237..11194259 | ||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 48089.20 Da | ||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 10.03 | ||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.46 | ||||||||||||||||||||||||||||||||||||||||
Length | 424 amino acids | ||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MAVFKKKKTS LTSLFLGCYK AKNASKYEGG EKAVMKIRTC PAFKRLSLSD ISDPSSPMSV MDDLSHSFTS QKLRLFTLSE LRVITHNFSR SNMLGEGGFG 101: PVYKGFIDDK VKPGIEAQPV AVKALDLHGH QGHREWLAEI LFLGQLSNKH LVKLIGFCCE EEQRVLVYEY MPRGSLENQL FRRNSLAMAW GIRMKIALGA 201: AKGLAFLHEA EKPVIYRDFK TSNILLDSDY NAKLSDFGLA KDGPEGEHTH VTTRVMGTQG YAAPEYIMTG HLTTMNDVYS FGVVLLELIT GKRSMDNTRT 301: RREQSLVEWA RPMLRDQRKL ERIIDPRLAN QHKTEAAQVA ASLAYKCLSQ HPKYRPTMCE VVKVLESIQE VDIRKHDGNN NKEGKKFVDI NKFRHHRKGK 401: RRVNIAYSDS LVYKESKAKQ NDGI |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)