AT5G06839.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : bZIP transcription factor family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
bZIP transcription factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: leaf whorl, root, flower, seed; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: bZIP transcription factor family protein (TAIR:AT1G08320.3); Has 904 Blast hits to 903 proteins in 71 species: Archae - 0; Bacteria - 0; Metazoa - 70; Fungi - 2; Plants - 802; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:2120911..2126217 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 46599.30 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.06 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.51 | ||||||||||||||||||||||||||||||||
| Length | 417 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQGHHQNHHQ HLSSSSATSS HGNFMNKDGY DIGEIDPSLF LYLDGQGHHD PPSTAPSPLH HHHTTQNLAM RPPTSTLNIF PSQPMHIEPP PSSTHNKEGN 101: RKGLASSDHD IPKSSDPKTL RRLAQNREAA RKSRLRKKAY VQQLESCRIK LTQLEQEIQR ARSQGVFFGG SLIGGDQQQG GLPIGPGNIS SEAAVFDMEY 201: ARWLEEQQRL LNELRVATQE HLSENELRMF VDTCLAHYDH LINLKAMVAK TDVFHLISGA WKTPAERCFL WMGGFRPSEI IKVIVNQIEP LTEQQIVGIC 301: GLQQSTQEAE EALSQGLEAL NQSLSDSIVS DSLPPASAPL PPHLSNFMSH MSLALNKLSA LEGFVLQADN LRHQTIHRLN QLLTTRQEAR CLLAVAEYFH 401: RLQALSSLWL ARPRQDG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)