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AT5G06070.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : C2H2 and C2HC zinc fingers superfamily protein
Curator
Summary (TAIR10)
Isolated as a mutation defective in petal development with specific effects on adaxial petals which are filamentous or absent. Encodes a Superman (SUP) like protein with zinc finger motifs. Transcript is detected in petal primordia and protein is localized to the nucleus.
Computational
Description (TAIR10)
RABBIT EARS (RBE); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc-finger protein 10 (TAIR:AT2G37740.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYGAeggNOG:ENOG410YQ0KEMBL:AB107371EMBL:AP002030
EMBL:AY088861EMBL:CP002688EnsemblPlants:AT5G06070EnsemblPlants:AT5G06070.1
entrez:830494ExpressionAtlas:Q1LYT2ExpressionAtlas:Q9LHS9GeneID:830494
Genevisible:Q9LHS9GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0006355GO:GO:0009409GO:GO:0030154GO:GO:0046872
GO:GO:0048441Gramene:AT5G06070.1hmmpanther:PTHR26374hmmpanther:PTHR26374:SF192
HOGENOM:HOG000124683InParanoid:Q9LHS9InterPro:IPR007087InterPro:IPR015880
KEGG:ath:AT5G06070OMA:PFREERAPaxDb:Q1LYT2PaxDb:Q9LHS9
Pfam:PF13912Pfam:Q9LHS9Pfscan:PS50157PhylomeDB:Q9LHS9
PRO:PR:Q9LHS9PROSITE:PS00028PROSITE:PS50157ProteinModelPortal:Q9LHS9
Proteomes:UP000006548RefSeq:NP_568161.1scanprosite:PS00028SMART:SM00355
SMR:Q9LHS9STRING:3702.AT5G06070.1SUPFAM:SSF57667TAIR:AT5G06070
tair10-symbols:RABtair10-symbols:RBEUniGene:At.32906UniProt:Q1LYT2
UniProt:Q9LHS9
Coordinates (TAIR10) chr5:-:1828426..1829106
Molecular Weight (calculated) 25339.10 Da
IEP (calculated) 7.83
GRAVY (calculated) -0.73
Length 226 amino acids
Sequence (TAIR10)
(BLAST)
001: MMDRGECLMS MKLRPMVTRP SSDGTLFWPF REERAFASAE EYGGGGGCMW PPRSYSCSFC GREFKSAQAL GGHMNVHRRD RARLKQQSLS PSSTDQATPP
101: ECDRQQQVLD VGSKVLVQEE TRKPNGTKRE ISDVCNNNVL ESSMKRYEHD NGEVKTDLSV GLLSTEFDPR KKQLINGSSS SWKRAKTDVS RFPMMLGLVI
201: GISEINGHHE ELDLELRLGA DPPKVN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)