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AT2G38880.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : nuclear factor Y, subunit B1
Curator
Summary (TAIR10)
Encodes a transcription factor from the nuclear factor Y (NF-Y) family, AtNF-YB1. Confers drought tolerance.
Computational
Description (TAIR10)
nuclear factor Y, subunit B1 (NF-YB1); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to water deprivation, regulation of transcription, DNA-dependent; LOCATED IN: CCAAT-binding factor complex, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, CBFA/NFYB, DNA topoisomerase (InterPro:IPR003957), Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072), Transcription factor, NFYB/HAP3, conserved site (InterPro:IPR003956); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit B8 (TAIR:AT2G37060.3); Has 1502 Blast hits to 1502 proteins in 245 species: Archae - 0; Bacteria - 0; Metazoa - 495; Fungi - 362; Plants - 528; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).
Protein Annotations
BioGrid:3812EMBL:AC005770EMBL:AY088554EMBL:BT004266
EMBL:BT005536EMBL:CP002685EMBL:Y13723EnsemblPlants:AT2G38880
EnsemblPlants:AT2G38880.1EnsemblPlants:AT2G38880.2EnsemblPlants:AT2G38880.5entrez:818472
ExpressionAtlas:Q9SLG0Gene3D:1.10.20.10GeneID:818472Genevisible:Q9SLG0
GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0043565
hmmpanther:PTHR11064hmmpanther:PTHR11064:SF45HOGENOM:HOG000211832InParanoid:Q9SLG0
IntAct:Q9SLG0InterPro:IPR003956InterPro:IPR003958InterPro:IPR009072
iPTMnet:Q9SLG0Pfam:PF00808Pfam:Q9SLG0PhylomeDB:Q9SLG0
PIR:E84810PRIDE:Q9SLG0PRO:PR:Q9SLG0PROSITE:PS00685
ProteinModelPortal:Q9SLG0Proteomes:UP000006548Reactome:R-ATH-2426168RefSeq:NP_001031511.1
RefSeq:NP_030436.1RefSeq:NP_850304.2scanprosite:PS00685SMR:Q9SLG0
SUPFAM:SSF47113TAIR:AT2G38880tair10-symbols:ATHAP3tair10-symbols:ATNF-YB1
tair10-symbols:HAP3tair10-symbols:HAP3Atair10-symbols:NF-YB1UniGene:At.24820
UniProt:A6XB86UniProt:Q9SLG0
Coordinates (TAIR10) chr2:+:16238685..16240316
Molecular Weight (calculated) 15181.70 Da
IEP (calculated) 4.60
GRAVY (calculated) -0.74
Length 141 amino acids
Sequence (TAIR10)
(BLAST)
001: MADTPSSPAG DGGESGGSVR EQDRYLPIAN ISRIMKKALP PNGKIGKDAK DTVQECVSEF ISFITSEASD KCQKEKRKTV NGDDLLWAMA TLGFEDYLEP
101: LKIYLARYRE LEGDNKGSGK SGDGSNRDAG GGVSGEEMPS W
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)