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AT2G02470.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : alfin-like 6
Curator
Summary (TAIR10)
AL6 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.
Computational
Description (TAIR10)
alfin-like 6 (AL6); CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Protein of unknown function DUF3594 (InterPro:IPR021998), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: alfin-like 7 (TAIR:AT1G14510.1); Has 1820 Blast hits to 1777 proteins in 193 species: Archae - 0; Bacteria - 0; Metazoa - 798; Fungi - 350; Plants - 563; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink).
Protein Annotations
BioGrid:179eggNOG:ENOG410YG6PeggNOG:KOG1632EMBL:AC005312
EMBL:AY087820EMBL:BT003905EMBL:BT005004EMBL:CP002685
EnsemblPlants:AT2G02470EnsemblPlants:AT2G02470.1entrez:814776Gene3D:3.30.40.10
GeneID:814776Genevisible:Q8S8M9GO:GO:0005634GO:GO:0005829
GO:GO:0006351GO:GO:0006355GO:GO:0008270GO:GO:0016036
GO:GO:0016568GO:GO:0048767GO:GO:0055065hmmpanther:PTHR12321
hmmpanther:PTHR12321:SF60HOGENOM:HOG000238550InParanoid:Q8S8M9IntAct:Q8S8M9
InterPro:IPR001965InterPro:IPR011011InterPro:IPR013083InterPro:IPR019786
InterPro:IPR019787InterPro:IPR021998iPTMnet:Q8S8M9KEGG:ath:AT2G02470
OMA:QTCDPEKPaxDb:Q8S8M9Pfam:PF00628Pfam:PF12165
Pfam:Q8S8M9Pfscan:PS50016PhylomeDB:Q8S8M9PIR:A84437
PIR:T00616PRIDE:Q8S8M9PRO:PR:Q8S8M9PROSITE:PS01359
PROSITE:PS50016ProteinModelPortal:Q8S8M9Proteomes:UP000006548RefSeq:NP_001189502.1
RefSeq:NP_178351.1scanprosite:PS01359SMART:SM00249SMR:Q8S8M9
STRING:3702.AT2G02470.1SUPFAM:SSF57903TAIR:AT2G02470tair10-symbols:AL6
UniGene:At.43901UniProt:Q8S8M9
Coordinates (TAIR10) chr2:+:652837..654621
Molecular Weight (calculated) 28848.80 Da
IEP (calculated) 4.76
GRAVY (calculated) -0.68
Length 256 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGITHPIPR TVEEVFSDFR GRRAGLIKAL TNDMVKFYQT CDPEKENLCL YGLPNETWEV NLPVEEVPPE LPEPALGINF ARDGMQEKDW VSLVAVHSDS
101: WLLSVAFYFG ARFGFGKNER KRLFQMINEL PTIFEVVSGN AKQSKDLSVN NNNSKSKPSG VKSRQSESLS KVAKMSSPPP KEEEEEEDES EDESEDDEQG
201: AVCGACGDNY GTDEFWICCD ACEKWFHGKC VKITPAKAEH IKHYKCPTCS NKRARP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)